barSeed - Barley Seed Development Database

Probe CUST_15465_PI390587928

Source Contig U35_36582

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15465_PI390587928	Hv_44K_v2	GTTGACTTGGTGCATCCTATTTGTTGGGTCTATGTATCCCCTTTTAGCCGCTGCAAAAAA	-1	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.579	1.374	1.050	1.000	0.323	0.454
Raw	115.594	161.935	108.581	164.346	18.008	28.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11247.1	1303	6e-21	87 - 143	98	56 / 57	minus
Harvest35	U35_36582	204	1e-23	12 - 72	98	60 / 61	minus

Contig Sequence (204 bp)

>U35_36582 204 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAGCGGCTAAAAGGGGATACATANGACCCAACAAATAGGATG
CACCAAGTCAACAAGTTGACGCCTGCGGCCCTGCCGTTTCATCAAGACAGAGTTGGAAAC
AATCCCGCCGTTTCATCAAGACAAACTTGGAAACAAGAGGCTACTAGAACCCCAAGCTCA
TTTTACCCTAAAAATGGTAAACTG

Homology of Contig U35_36582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None