barSeed - Barley Seed Development Database

Probe CUST_15461_PI390587928

Source Contig U35_36584

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15461_PI390587928	Hv_44K_v2	CTTGGTTCGATCTGTTATGGAAGCTTGTGCTTCTCTGTAATTCTCTGCAGACAACGACTC	50	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45512.1	635	2e-24	267 - 326	100	60 / 60	plus	ABC01129 ABC01142 ABC01164
JLOC1	JLOC1_29549.1	390	8e-25	267 - 326	100	60 / 60	plus
Harvest35	U35_36584	514	3e-25	51 - 110	100	60 / 60	minus

Contig Sequence (514 bp)

>U35_36584 514 Hv_44K_v2
TTTTTTTTTTTTTTTTTATAATCCAGCAGAGAAACTTTTCTGCCGGTTCAGAGTCGTTGT
CTGCAGAGAATTACAGAGAAGCACAAGCTTCCATAACAGATCGAACCAAGACAAAGTAAC
ACGAACAGGATCTTGGCAAGAACTGAAAGGGCTGTTGCTATTTCTCCAGATCATAAGATT
TGATCCCACAAACAAAGGTTACATGACAACGGAGTCTGAACCAACAATTACACAGCAACA
TCGATGCACCGGGAAGAAACTACTTAGGCAGAGGTGAACTTGGTGACGGCCTTGGTGCCC
TCGGAGACGGCGTGCTTGGCGAGCTCGCCAGGGAGGACGAGGCGCACGGAGGTCTGGATC
TCCCGGGACGTGATGGTGGGCTTCTTGTTGTACCGCGCCAGCTTGGCCGACTCGCCGGCG
AGCTTCTCAAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATG
CCGATGTCGGGGTGCACCTGCTTGAGCACCTTGA

Homology of Contig U35_36584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None