barSeed - Barley Seed Development Database

Probe CUST_15458_PI390587928

Source Contig U35_36586

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15458_PI390587928	Hv_44K_v2	TTTTAAGGGGAGGAGGCCTACTATGGAGGATCGCTACGACGTAAAGTTCGCTAAAATGAA	311	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.381	0.508	0.953	1.552	0.968	1.358
Raw	95.023	180.818	326.772	835.047	184.292	281.556

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355076	1237	2e-24	398 - 457	100	60 / 60	plus	None
MLOC	MLOC_15815.3	1249	2e-24	365 - 424	100	60 / 60	plus	None
MLOC	MLOC_15815.4	416	2e-24	37 - 96	100	60 / 60	plus	None
MLOC	MLOC_15815.2	1883	2e-24	866 - 925	100	60 / 60	plus	None
JLOC1	JLOC1_10864.2	1213	8e-25	36 - 95	100	60 / 60	plus
JLOC1	JLOC1_10864.1	1162	8e-25	39 - 98	100	60 / 60	plus
Harvest21	ABC31697	375	3e-25	312 - 371	100	60 / 60	plus
Harvest35	U35_36586	375	3e-25	312 - 371	100	60 / 60	plus

Contig Sequence (375 bp)

>U35_36586 375 Hv_44K_v2
GGAAACCTGCTAGGGATGGCACGCGCCGCTGCCGCTAACCTGCGTGGCCTGGTCGGCATT
GCAGCGGCGGGCCGGCGGCGGGTGACCGCCTCCGTCGCGACACCCCGCGGGTCGCCCGGC
GGGCGCGGATTCCGGGCAGTGGCGTCAGGCTCCGGTGGCAGGACAACTCCTGAATCCCCC
TCTTCGTCCTCGCCGGCTCTACCACAGCTGCAGCCGCGGCGCGGCTTGGCAACGAGACGA
GCGGTGCTGCGTAACTTGATTAGCGGCGGCTTACAGAGTGAGGATGGTAAGCTGAGCTGT
GGATATTCAAGTTTTAAGGGGAGGAGGCCTACTATGGAGGATCGCTACGACGTAAAGTTC
GCTAAAATGAAGGGA

Homology of Contig U35_36586 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None