- Probe CUST_15440_PI390587928
- Source Contig U35_36594
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15440_PI390587928 | Hv_44K_v2 | CTGATTGTATGGGGTTTGAGACTATTATTATGCTTGATTGTCATGATACATCTTTGCATG | 34 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.308 | 2.073 | 1.481 | 0.874 | 0.306 | 0.290 |
| Raw | 690.915 | 1616.225 | 1017.722 | 929.401 | 114.946 | 121.853 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_36594 | 317 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus |
Contig Sequence (317 bp)
>U35_36594 317 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACAAGGTGAATAAAATCATGCAAAGATGTATCATGACAATCA AGCATAATAATAGTCTCAAACCCCATACAATCAGATAGCTCTAGTAATTAAAAACAGGTG CTTATAAATTTCCAGGTTACCAATTGTCATCTATCACAATAAGGAGAAACTTTGAGAGGT GCATTCATTCTCAACTCATCTACAATGGAGCTCCATTTTATCGATGGTGGAGATAGTGCC CATAGATATGCTTGTTTTTCAGCCTTCACATGGCATTTTTTGTAGGATCATCCTTGAGGG TAGGAAATACGGGGGGC
Homology of Contig U35_36594 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |