- Probe CUST_15434_PI390587928
- Source Contig U35_36598
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15434_PI390587928 | Hv_44K_v2 | CCAGAAAGAGTCAATTAATATGCAGTAGTTCGTCTCGAACATAATCGATGTACTGTTTTT | 78 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.078 | 1.182 | 1.201 | 0.970 | 0.449 | 0.439 |
| Raw | 370.236 | 651.860 | 562.454 | 706.329 | 115.020 | 124.286 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5159.2 | 1206 | 2e-24 | 1093 - 1152 | 100 | 60 / 60 | plus | ABC15818 |
| MLOC | MLOC_5159.1 | 1816 | 2e-24 | 1697 - 1756 | 100 | 60 / 60 | plus | ABC15818 |
| JLOC1 | JLOC1_3300.1 | 1810 | 8e-25 | 1692 - 1751 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36598 | 572 | 3e-25 | 79 - 138 | 100 | 60 / 60 | minus |
Contig Sequence (572 bp)
>U35_36598 572 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAGCAATAATAATTAAAGAATAATTTGTTGCACAAGTCACAG CCAAAAAAAAATCCAAACAAAAACAGTACATCGATTATGTTCGAGACGAACTACTGCATA TTAATTGACTCTTTCTGGGGTCTCTTCGTTCCAACATGGCGTGTATGGAAAACAATCAAT CGCCTGAGATTCATTAGGAATGCCGGAGTCAAAATATCGGGGACCTGTTGGGTATATGCT ACCTAAAATTTCAACCTTGAAGCTATTCAAATGATAGGCAAACGCCATTGCATTCAATTT ATAGTCCTCTGACCTACTCAAAAAGAGAATCTCTTTGTATGGGTGAAATCCAAGTACCTC AATCTCAAAATATGGACGATGTTGCACTTCAACAATGTCTAGGTTCTCATGGAAATCATC ATCATCATCGGAGTTCCATTCAAATTTCTCTTGAATTACTTCTTCCTTTTTGATATTTGG GAGATGAGAACCAAAAATCCCATAGTTAATGTCTTGTAAGGTCCAGGGTCCATGAACTTG GCCATCAAACATTTGCACAGGCTTAAGGGCAT
Homology of Contig U35_36598 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |