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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15427_PI390587928Hv_44K_v2TGTGGGTGTTCATCATCATGGTAATAATTTGTACTACTACTTGAGATGAGACGCTTTATT24GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1411.4531.1590.8530.3290.353
Raw 422.299833.759586.545670.01491.873107.692



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_6668.111584e-231045 - 11059860 / 61plus
Harvest21ABC504836633e-2525 - 8410060 / 60minus
Harvest35U35_485796633e-2525 - 8410060 / 60minus



Contig Sequence (663 bp)

>U35_48579 663 Hv_44K_v2
TGCCGATGGCATCATCTTTTGTAAAATAAAGCGTCTCATCTCAAGTAGTAGTACAAATTA
TTACCATGATGATGAACACCCACAGTGGTAGATCCCAGGGAAAACGTACAATACAGCACC
ATCATATTCATATCCAGCTACAAGTTAGTTAAGCTTTGACGCTGGAGCACGCTAGAAAAG
AGAATAAGCTAACCTCCAAGAACGGCACGACCACTGCACAGCTTACAAATTGACATACTG
AGCCAGGCAAGACAGCTGCTATATACCGTTCTTTGCATGTGAAACCCGGAAATCCCTGAT
GATCATGGAGTGCTGAGGCTGACATGAGCATGCCCAGCAAGATTGTTTCATCTATATATT
GCCGTTGCAGGATCTCTGATTGGTTGCAGCCGCATTGGCGCGTCACTTCTTCTTTGTTTT
TGTGTCAAACACCAAAGCCTTGACACAAAGGCGAGGCTTGGCCGAGACGAGTTCAGCTGG
GAGAACAGACACACCGGCCACAGAAGATCCGACGGGCACCCCGGAAATGGGGAGCACCTC
CACCAGTACTGCCACCTCAGGAGACTTGAGATCCACAATTGCGTCCTTAGCAACTGACTT
GACAGCAGCAGCAACAACCTTGAAACATTGTTGCCTATCCATTAAAGCTTGTTGAACTGA
GCT



Homology of Contig U35_48579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None