- Probe CUST_1541_PI390587928
- Source Contig U35_30240
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1541_PI390587928 | Hv_44K_v2 | TCGATGTAGGTGCACTCCAAAATACATCGTTCGAACTACATCAGCAGAATCCTATGTGAT | 480 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.766 | 1.603 | 2.880 | 2.738 | 0.612 | 0.636 |
| Raw | 268.926 | 882.546 | 1331.667 | 2119.499 | 156.710 | 179.705 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10982.2 | 2069 | 7e-23 | 1439 - 1499 | 98 | 60 / 61 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.4 | 2108 | 7e-23 | 1372 - 1432 | 98 | 60 / 61 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.6 | 1709 | 7e-23 | 1079 - 1139 | 98 | 60 / 61 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.5 | 1764 | 7e-23 | 1193 - 1253 | 98 | 60 / 61 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.1 | 2542 | 7e-23 | 1831 - 1891 | 98 | 60 / 61 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.3 | 1385 | 7e-23 | 1287 - 1347 | 98 | 60 / 61 | plus | ABC25098 |
| JLOC1 | JLOC1_7230.2 | 1975 | 4e-23 | 1280 - 1340 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_7230.1 | 1884 | 4e-23 | 1189 - 1249 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC30055 | 543 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30240 | 543 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus |
Contig Sequence (543 bp)
>U35_30240 543 Hv_44K_v2 GTTCAACAAGTTTGCAAAAGGTTTGTTTGAAGGTTTGTTTGAGTGGCGGGGTGATGCTAA TACATTGGACACACTCCACCTTCACTCTTTTGCCATTGATGCAGCCAAGTATTGGATCAA TGATGCTATCAATGTTCATAAAGTTAAATCGATTGATTTCACTGAAAATACAAGATGGGA AGCTTTTTACTTGGATCCTAAAGCTATCAACTTTAGGTCTCTATATCTGCGAAGTATGAA GCTCACTAATGTTATAATAGTCACATCTGTCTTTGATGAGCTCAGCCGTGAGTGCCCATC TTTGGAAAATCTGCAGTTGGCAAACAGCACTCTTTGTTGTCCTGAGATTTCATCAAGTTC ATTGGAGACTCTGGAGATTTCATCCAGTTCATTGAAGACTCTGGAAATAATAAACTGCTT AGTTTTAAATCATCTTCTGATCCGTACTCGCAAACTGGTCTCGTTATGCTTCAAGGACAC TCGATGTAGGTGCACTCCAAAATACATCGTTCGAACTACATCAGCAGAATCCTATGTGAT CTT
Homology of Contig U35_30240 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |