barSeed - Barley Seed Development Database

Probe CUST_15418_PI390587928

Source Contig U35_48580

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15418_PI390587928	Hv_44K_v2	ATTTGGCCACTATATCTCCTAAAATTAGGCCACTTTCCAACAACTTCGCAAGAGATACCC	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14781.1	5074	3e-22	1005 - 1063	98	59 / 60	plus	ABC11312
MLOC	MLOC_14780.2	1731	3e-22	1114 - 1172	98	59 / 60	plus	None
Harvest21	ABC50484	628	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48580	628	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (628 bp)

>U35_48580 628 Hv_44K_v2
ACTGGGTATCTCTTGCGAAGTTGTTGGAAAGTGGCCTAATTTTAGGAGATATAGTGGCCA
AATTCTCTGCTAGAACCAAGAATTTCACATATGTTCTACATAAATTACGGGCCAAATTCC
CCCATCACGGATGGATTTTATTCAACCAAACATACAAATATGGCATCGACACGCGAGCTC
CTTACAATGACACTTGTACTGCACCATATCAGGCATGTTTCAGTCCACTACCATGATGGA
CAGCCGAGAACATGGTGCATCTCCCCGAGCCGTTCCTTTTCTCCACACAATTCTTTCAGG
GTGCCTCATGACAAGCGGGCATCAGATCGTCCTTTTCTCCACACAATTCTTTCAGGGTGC
CTCACGCAAGTACTTGGACAAGCGGGCATCATATTGCCACGGCAGGCCGGTGCGCGCGCC
GATCGCTCTGCATTTGATACCTGCCTGCCACATGAACAGCAAACCAAATCAAGCACGCCC
TCAGTGTACATCTCAGTCAGAATAAAGCCACTTCTTCCGTGGCATTAGCAGACTGGACAT
CGGTTTACTTTACCACTTGACAGGCAAAAGGCAGCATCTTTTCCGGAGCCATATCTGTGC
ACAGCCCGTAAAGCACTGCTCCTATAAA

Homology of Contig U35_48580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None