barSeed - Barley Seed Development Database

Probe CUST_15417_PI390587928

Source Contig U35_48582

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15417_PI390587928	Hv_44K_v2	AAATCTGTTCAACTCTTGAAGATAATCTGAATACCCCTACCCTCTTGTATCTTACCTCAG	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251534.1	2440	2e-24	2016 - 2075	100	60 / 60	plus	ABC10566 ABC10567
Harvest21	ABC50488	649	3e-25	366 - 425	100	60 / 60	minus
Harvest35	U35_48582	649	3e-25	366 - 425	100	60 / 60	minus

Contig Sequence (649 bp)

>U35_48582 649 Hv_44K_v2
GTGAGGATGTAATTAATAGTCTTAATCAAGCGCCCCAAAAAATCAGTCCATTGGGTAGAA
GGTATACACTCGGTACGCTCTGTGTAGTATCTTGCGCTACGCATGTCCGCATCACGTAAA
TCAAGTGCCAACCTGTTATGTTCTCTGGTGATGAGAGAAAGACTGTTTGTGTACATCAGA
CAGAAGCAGACTAGTTTGTGCAACCCAAGTTTGCCTCTCACTCACTGTCTTCTTCAAAAC
CTTCTGGACATTTTACACATATGGCCTGGGTGCAGTTGTGCGTGCTGAACTACATACAGT
ATCACCCACCGAATGTCCGCAAGCAGGTACCGATTTTCAAATAACAGCAACAGCAACTTG
TTCATCTGAGGTAAGATACAAGAGGGTAGGGGTATTCAGATTATCTTCAAGAGTTGAACA
GATTTCCAACTAATGCATATCTACCGTTTCTTCCATGAGTAGCTCGTCTACGCATTGGAG
GTGCATAAACTGTTATTGGGAGGACCCAGTCCCCCTTCTCTCTTTTCTCAACAAGAAGTG
GGTGCTCATACCTTGATGAGTCCATTCCTGCCGGAGTTGTGAAGAACTCAAATCTAAGGG
ACCACTGTACAGTAACCTTTGAGGTAGCAAATGACATTGGTCCCTCAAT

Homology of Contig U35_48582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None