barSeed - Barley Seed Development Database

Probe CUST_15404_PI390587928

Source Contig U35_7501

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15404_PI390587928	Hv_44K_v2	GGGAAGACCAGTAGTAAAAATGTTGATAAGCGCACGAGGCATGATTCTGATTCTGATTCT	823	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.199	1.239	1.254	0.862	0.513	0.480
Raw	1395.717	2187.568	1988.283	1959.429	449.685	455.432

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58250.2	2567	7e-23	1456 - 1515	98	59 / 60	minus	ABC10547
MLOC	MLOC_58250.1	2913	7e-23	1228 - 1287	98	59 / 60	minus	ABC10547
JLOC1	JLOC1_37823.1	1562	4e-23	805 - 864	98	59 / 60	minus
JLOC1	JLOC1_37824.1	3006	4e-23	1625 - 1684	98	59 / 60	plus
Harvest21	ABC16278	883	3e-25	824 - 883	100	60 / 60	plus
Harvest35	U35_7501	883	3e-25	824 - 883	100	60 / 60	plus

Contig Sequence (883 bp)

>U35_7501 883 Hv_44K_v2
GGGGAATGATAGGAACAGTCACAGCAGAAGTTCTAGGAAGAGTAAGCATGGGTATGATTC
AGAAGATGATTCTGAGTCTGACCATGATGAGAGAAAGGGAAAGAAATACATAGAGAGATC
CTTCTTAGATAGAGTCCCTGATTCTGAGATTCTTCATAAGAATGCTAAACAGGGAAAAGG
CGCACGCCATGATTCTGAGTCTGATTCAGATAGCGACCATGGCAAGAAGAAGGCAAAACA
CACGAAAAACAATCGTGATGAGGGAAAGAACGGTCCTGTGAAGAGCTCTCGTCATGACTC
TAAAGATGAGAAGCCCAGAAGAAGCAAGTACAAGGGTGATTCGTACAGTGAGTCGGAGAG
TGATGTCTCTGATTCAGATTCAGGCAGCGACTTTGATCGGAAACAGAAAAAAGGTGAACT
CCTTGGTTCTAAAAATGATAAGCAGGCACCAAAAAGTAAAGAGAAGGAGGCCAGTCTTGG
TAAGAATGTTGATAAGCGCAAGAGACATGATTCTGATTCGAATGGTTCTGCTCATGATAG
GAAAATACACCTTGATGCAGCTATTGTTAGGAAGGATCATTCCCGTGATAAACCGAAGAT
TGACCCAAGGAGTGATGAATATAAAAACAAAAGGCCTTTGAAGACTTCTCGCCATGACTC
TGAAGATGAGAAGCCACACAGCAAGGTCCTTCGGAAGGAAAAATACACCGGTGAACCAGA
GATTGACTCAGAGAGGTATACCAGTGAGAAGAACAAGCCTGCAAAATCCTCTATCCATGT
TCCTAAAGCTGATAAGGAAGCACCAAAACATAAAGAGAAGGAAGGGAAGACCAGTAGTAA
AAATGTTGATAAGCGCACGAGGCATGATTCTGATTCTGATTCT

Homology of Contig U35_7501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None