barSeed - Barley Seed Development Database

Probe CUST_15401_PI390587928

Source Contig U35_7504

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15401_PI390587928	Hv_44K_v2	GCTCGTGATCACTGCTAACTCAACATGTTACATGGTGGAATCACGTGAAATTTATACAGT	364	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374587	1764	2e-24	370 - 429	100	60 / 60	plus	ABC16071 ABC24936
MLOC	MLOC_56313.2	8146	2e-24	1084 - 1143	100	60 / 60	plus	ABC08567 ABC08568 ABC16071 ABC24936
MLOC	MLOC_56313.3	5068	2e-24	1084 - 1143	100	60 / 60	plus	ABC08567 ABC08568 ABC16071 ABC24936
MLOC	MLOC_56313.1	3964	2e-24	1084 - 1143	100	60 / 60	plus	ABC16071 ABC24936
JLOC1	JLOC1_36411.10	3107	8e-25	363 - 422	100	60 / 60	plus
JLOC1	JLOC1_36411.7	4039	8e-25	394 - 453	100	60 / 60	plus
JLOC1	JLOC1_36411.5	4427	8e-25	1502 - 1561	100	60 / 60	plus
JLOC1	JLOC1_36411.4	4791	8e-25	1502 - 1561	100	60 / 60	plus
JLOC1	JLOC1_36411.3	5089	8e-25	1502 - 1561	100	60 / 60	plus
JLOC1	JLOC1_36411.2	6843	8e-25	1502 - 1561	100	60 / 60	plus
JLOC1	JLOC1_36411.1	7505	8e-25	1502 - 1561	100	60 / 60	plus
Harvest21	ABC16071	475	3e-25	52 - 111	100	60 / 60	minus	ABC16071
Harvest35	U35_7504	475	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_7504 475 Hv_44K_v2
GCACGAGGGTAGCTGGCTTGAGTAGTCATCATCATCATCACCAGAAGAAGAAGAAGATGC
AGGACTGGAGTCCTGTGCTCATCTCCTTCATGCTCTTCATCCTTCTGTCCCCGGGGCTCC
TCTTCCAGATCCCTGGCAAATCGCGGACGATCGAGTGCGGAAAATTCCACACGAGCGTCG
TTTCCATCCTCATCCACACCATCATCTTCTTCGCCCTCGATGCCTTCTTCCTCGTTGTCG
TTGGCGTCCGCATCGAGTTTGGATCCTCGTCATGATTAGTAGAGTACTCTGCTTCACCCT
GCTATAGTTTCTTTTGCTATTTCTCTCTGTTTGGTTCTTGCTGCTTGTTAATTAGTTCAT
CTATGCTCGTGATCACTGCTAACTCAACATGTTACATGGTGGAATCACGTGAAATTTATA
CAGTTGGGATTTAATGCAAACATTACCTTGTATGCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None