barSeed - Barley Seed Development Database

Probe CUST_153_PI415269222

Source Contig TA34374_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_153_PI415269222	Hv_44K_v2	GTTTAGACGTGTCGCAAGTTTTTTCTTTCTTTATTTTTGGAAGACAAAATGTGTCTCGGT	1186	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.217	0.202	1.068	2.229	1.268	1.456
Raw	920.744	1328.463	6358.950	20180.097	4109.003	5158.353

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1319 bp)

>TA34374_4513 1319 Hv_44K_v2
ACGCTCAGCGTGCCCAAACCGCTCGTCGATTTCGCCAACAAGCCCATGATCCTGCACCAG
ATCGAGGCTTGAAAGATGTGGGAGTCACAGAAGTTGTCCTGGCGATCAATTACCAGCCAG
AGGTCATGCTCAACTTTCCAAGGACTTCGAGAGCAAGCTTGGCATCAAGATCACCTGTTC
CCAGGAGACAGAGCCAATGGGAACCGCGGACCGCTGGCCCTGGCCCGCGACAAGCTCGAC
GACGGATCCGGCGAGCCTTTCTTCGTCCTCAACAGTACGTGATCAGCGAGTACCCGTTCG
CAGAGCTCATCGAGTTCCACAAGTCCCATGGCGGCGAGGCCACGATCATGGTCACCAAGG
TGGACGAGCCTTCCAAGTACGGCGTGGTGGTGACGGAGGAGGAGACCGGGAAGGTGGAGC
GGTTCGTGGAGAAGCCCAAGGTGTTCGTGGGCAACAAGATCAACGCCGGCATCTACCTGC
TGAGCCCGTCGGTGCTGGACCGCATCGAGCTGAAGCCGACGTCCATCGAGAAGGAGGTGT
TCCCGCGTATCGCCGCGGACAAGGGCCTGTTCGCCATGGTGCTGCCGGGGTTCTGGATGG
ACATCGGGCAGCCGAGGGACTACATCACGGGGCTGAGGCTCTACCTGGAGTCCCTGAGGA
AGAGGTCACCGGCGAGGCTGGCCTCCGGCGCGCACGTCCTGGGCAACGTGCTGGTCCACG
AGACGGCGACGATCGGGGAAGGGTGCCTGATCGGGCCGGACGTGGCCGTCGGCCCCGGGT
GCGTGGTGGAGGCCGGGGTGCGGCTGTCGAGGTGCACCGTGATGCGTGGCGCGCGCGTGA
AGAAGCACGCGTGCATCTCCGGCAGCATCGTGGGGTGGCACTCGACGGTGGGCAAGTGGG
CGCGCGTGGAGAACATGACCATCCTCGGCGAGGACGTGCACGTCTGCGACGAGGTGTACA
GCAACGGCGGCGTCGTGCTCCCGCACAAGGAGATCAAGTCCAGCATCCTCAAGCCCGAGA
TTGTCATGTGAGTGTGGCGATCGAGCCGCCGTTCCCGCGCCCGCGCCACATGGTGAAAAA
CGGTCGTATATTTCTTCATGTGTTCGTTGTTTATTATTGGTCGCCGAGCTGTTTGTCTGC
AAGAGTTGTCCATCCAACTGCCAAGTGTTCATCAGGCTCTATGTATGTTTAGACGTGTCG
CAAGTTTTTTCTTTCTTTATTTTTGGAAGACAAAATGTGTCTCGGTTAAATTTAAGCCCG
GGCTTTAATTTGTAGATAGGTGTCAGATGAATGGGAATAAAGCATCAGTTTTACTACCC

Homology of Contig TA34374_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16150.3	362	1e-168	protein\|mannose-1-phosphate guanyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g66930.1	362	4e-170
Arabidopsis v10	AT2G39770.1	361	3e-154	\| Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 \| Glucose-1-phosphate adenylyltransferase family protein \| chr2:16589401-16590741 FORWARD LENGTH=361