- Probe CUST_1539_PI390587928
- Source Contig U35_30242
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1539_PI390587928 | Hv_44K_v2 | TCTATCTGCATCAACTACTGGAACTGGGACTTCCAAATCATGCTTGGTTTGAGCTATGCG | 12 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.015 | 0.029 | 1.120 | 3.334 | 1.559 | 1.329 |
| Raw | 2.661 | 13.386 | 519.453 | 2398.964 | 403.418 | 366.409 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372397 | 1715 | 2e-24 | 960 - 1019 | 100 | 60 / 60 | plus | ABC29759 |
| MLOC | MLOC_69487.1 | 4216 | 2e-24 | 805 - 864 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.2 | 4294 | 2e-24 | 805 - 864 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.8 | 4326 | 2e-24 | 865 - 924 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.7 | 2269 | 2e-24 | 865 - 924 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.4 | 4182 | 2e-24 | 786 - 845 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.5 | 4206 | 2e-24 | 786 - 845 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.6 | 3778 | 2e-24 | 786 - 845 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.3 | 4445 | 2e-24 | 805 - 864 | 100 | 60 / 60 | minus | ABC29759 |
| MLOC | MLOC_69487.12 | 3264 | 2e-24 | 152 - 211 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_69487.13 | 3325 | 2e-24 | 152 - 211 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_69487.11 | 1359 | 2e-24 | 220 - 279 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_69487.10 | 1394 | 2e-24 | 486 - 545 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_46040.2 | 3686 | 8e-25 | 2823 - 2882 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46040.1 | 3698 | 8e-25 | 2835 - 2894 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30057 | 402 | 3e-25 | 13 - 72 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30242 | 402 | 3e-25 | 13 - 72 | 100 | 60 / 60 | plus |
Contig Sequence (402 bp)
>U35_30242 402 Hv_44K_v2 CTTGATTCGCTCTCTATCTGCATCAACTACTGGAACTGGGACTTCCAAATCATGCTTGGT TTGAGCTATGCGGCCAGCATCCGTGTCAGCAACGAGCTTGGTGCTGGCCATCCAAAGGTC GCGAGGTTGTCGGTCATGGTGGTCGTCACGGCGAGCATCGCCTTCAGCATTCTCGCCACG GTCGTCGTGATGGCCCTCAGGTACCCGCTGAGCACCCTCTACACGAGCAGCACGACGGTG ATCGAGGTCGTCATCGCCCTGACGCCGTTGCTGGCCATCAGCATCTTCTTGAACGGGATC CAGCCAATCCTCTCAAGGGTGGCCGTCNGGAGCGGGTGGCAGGTCATAGTTGCCTATGTC AACGTGGGGGCTTACTACATCATCGGGCTGCCGATCGGATGC
Homology of Contig U35_30242 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g42130.1 | 501 | 2e-67 | protein|MATE efflux family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g01610.1 | 505 | 7e-71 | |
| Arabidopsis v10 | None |