- Probe CUST_15396_PI390587928
- Source Contig U35_7510
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15396_PI390587928 | Hv_44K_v2 | GATACCTCTCCAGAGGGTGTGAGTACATAAAGAGATGGGTCCTTGTACATACAGTTTTTT | 378 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.928 | 5.042 | 1.501 | 0.821 | 0.490 | 0.589 |
| Raw | 109.835 | 120.288 | 30.103 | 27.253 | 3.277 | 6.249 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60750.1 | 4530 | 2e-24 | 2306 - 2365 | 100 | 60 / 60 | plus | ABC46643 |
| MLOC | MLOC_60749.2 | 1701 | 2e-24 | 1235 - 1294 | 100 | 60 / 60 | plus | ABC46643 |
| MLOC | MLOC_60749.1 | 2386 | 2e-24 | 2192 - 2251 | 100 | 60 / 60 | plus | ABC46643 |
| MLOC | MLOC_60749.3 | 2188 | 2e-24 | 2028 - 2087 | 100 | 60 / 60 | plus | ABC46643 |
| JLOC1 | JLOC1_39641.1 | 4003 | 8e-25 | 1805 - 1864 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_39640.2 | 3662 | 8e-25 | 2151 - 2210 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39640.1 | 2915 | 8e-25 | 1404 - 1463 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26026 | 480 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7510 | 542 | 3e-25 | 379 - 438 | 100 | 60 / 60 | plus |
Contig Sequence (542 bp)
>U35_7510 542 Hv_44K_v2 GCCGAGAAGAAGCACTCGACGTTCAAGAGGGTGGGCGACGACCTGGTGCTCAAGGCCAAG GTGCCGCTGGTGAACGCGCTCACCGGCTGGTCCTTCTCATTCAGGCTCCTGAGTGGCAAG AAGGTGAGCTGCTCGTTCGACGACGAGGTCATCTGCCCGGGGCACGAGAAGGTGATCAAA GGGGAAGGGATGCCGATCGCCGAGCAGAGAGGCACGCGGGGCGATCTGAGGGTGAAGCTC GAGATAGTCTTCCCAGATCAGCTCACCGACGAGCAGCGCTCCGGCCTCGCTGAAATCCTC AAGGACTGCACCTGAGCGAGTCTGCAATGTTGTTGTTAGGCCCAGCTGTACGTGTCAAGT TTTCCCGGCCATGCTGTTGATACCTCTCCAGAGGGTGTGAGTACATAAAGAGATGGGTCC TTGTACATACAGTTTTTTTTTCTCTCTCTCTACATATATGTATATGAAACGTGAGTTTTT TTCTCTCTCTCTACATATATGTATATGAAGCATTATGTGGATAGTAAAAAAAAAAAAAAA AA
Homology of Contig U35_7510 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g65480.1 | 328 | 1e-53 | protein|dnaJ domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g56620.1 | 327 | 4e-54 | |
| Arabidopsis v10 | None |