barSeed - Barley Seed Development Database

Probe CUST_15382_PI390587928

Source Contig U35_49748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15382_PI390587928	Hv_44K_v2	TGAACACTTGTTAGTTCGTAACTTGTCACTCGTAATCAAAATGTCTACTGTTTGTTCTCA	524	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.615	1.603	1.175	0.719	0.353	0.281
Raw	174.051	273.839	175.328	173.349	28.558	24.888

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39555.1	1672	6e-24	512 - 570	100	59 / 59	minus	None
JLOC1	JLOC1_25797.1	1245	3e-24	118 - 176	100	59 / 59	minus
Harvest21	ABC51642	584	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_49748	584	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_49748 584 Hv_44K_v2
GGCCGCCGGCCCCGCCCGCTGGCGCGACGCCGTGCGCACCTACAACCGCATGCTCTCCGG
CGGGGTCGCGCCCAACGCTTACACCATGGCCGTGCTTGTCAAGGGGCTCGCGGCGGGCGA
CCGGTGCGCTGAGGCACGCAAGTACCTGCTGGAGATGCTCGACCGGGGGATGCGCCCCAA
TGTCGAGACTTGCCTTGCTGCCTTCGAGGCGCACGTCAGGATGGACAAGGTCGAAGAGGG
GAAGGCGCTGCTCGAGATGATGAAGAAGAAGGGGTTCACGTTGGACGAGGAGGCAGTGCG
CGGCGGCACCGTCAAGCGGGGGCATGTCTTCAGGGCTGTCATGAACATGCTCTTTGGGAA
GCCATCATAGTTAATGGTACGCACTATCTGTTTCTTTCATATATACTCCCTCCGTTCTAA
AACAAGTGTCGCAGATTTAATACTAAGTTAGTATAAATTTTGTACCAGATCAACGACATT
TATTTTTAGAGAGAGGAAGTATATGATAGCACGATGTTGTTGCATGAACACTTGTTAGTT
CGTAACTTGTCACTCGTAATCAAAATGTCTACTGTTTGTTCTCA

Homology of Contig U35_49748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20354.1	333	9e-56	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g13440.1	270	3e-69
Arabidopsis v10	None