barSeed - Barley Seed Development Database

Probe CUST_15374_PI390587928

Source Contig U35_25798

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15374_PI390587928	Hv_44K_v2	TTCTTCCCACAGCATGGTAACTATCGCCGCCAGTGGTCTTTAAAATGTAGGAATGCTGAT	508	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.069	1.407	1.646	0.955	0.630	0.474
Raw	38.505	71.249	78.036	65.546	16.235	13.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_25798	571	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_25798 571 Hv_44K_v2
AGATTTCTGCATCCTATCGTCGATTTCCACGCGCCCGGGCCTCTCCCTCCCACGCTCCCA
CGCCGCCGCTTTTCTTCCTTCCTTCCTTCCACATTGCGACGCCGCCGCGGCCCTGTGTCG
ATACCTGAACCCTGCCTTTGGTCATTTGGTGGTCTCCAATAAACCAAGGGAACGACTGTG
GATGCTTTGATGGTGAATCGGCTCGGAGAGGAGCCCTGGGGAGAGTGGGAGCTTCAGTTT
GGCGTCCTTACATTCTGACCGGTCTCAAGCTTGATTTCCACTACGTTGGTTTAGAAGATT
ACTATTGCCTAACTCGACTTCTCAAAAAGAGGAGCTGGGAGCTGGGAGGAATGACTCATC
TGGATACAAAACCTATCTCCATCGGTGGTTCCCCCAATCATGACCAATCACCTGAAGCGC
CCTCAAGAATTAGATACGATGAAACCCAAGAAACTGAAGCAGGAAAATCATTGAATGAGA
AGCTAACATGGACAAATGGGCCATATGATTCTTCCCACAGCATGGTAACTATCGCCGCCA
GTGGTCTTTAAAATGTAGGAATGCTGATATG

Homology of Contig U35_25798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None