barSeed - Barley Seed Development Database

Probe CUST_15367_PI390587928

Source Contig U35_37779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15367_PI390587928	Hv_44K_v2	AACTGTGGAGAGTGGAAGTAATTATTCTTCACGAAGAGATGATGATACTGTGATGAGTGG	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358309	2409	2e-24	1572 - 1631	100	60 / 60	plus	ABC22128
MLOC	MLOC_57432.1	1670	2e-24	1195 - 1254	100	60 / 60	plus	ABC22128
JLOC1	JLOC1_37225.1	1620	8e-25	1158 - 1217	100	60 / 60	plus
Harvest21	ABC33478	647	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_37779	647	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_37779 647 Hv_44K_v2
CTCTACGAGGGCGCGGGCAAAACAAAGCGGCCTTCCATTGTATTTCCTTCTTCTGCCAGA
AGAATGGATACTCTCAATGATTTATTGGCAGCAAGTGACCTTGTTTCACTTCACTGTGCG
TTAACAAATGATACAACAAACATAATTAGTGCCGAGCGTCTGCAGCACATAAAACCTGGA
GCTTTCATAGTCAATACCAGTAGCTGCCAGCTGATAGATGACTGTGCACTCAAACAACTA
TTGCTCGACGGCACTATTGCTGGATGTGCATTGGATGGTGCTGAAGGTCCACAATGGATG
GAAGCATGGGTACACGAGATGCCGAACGTGCTAATTCTTCCTCGAAGTGCAGACTACAGT
GAAGAAGTGTGGATGGAAATCAGAGAGAAAGCAATCACAATATTACAATCCTTTTTCTTT
GATGGCATTGTTCCAAACAATGCTATTTCTGATGAAGATGAAGCAATAAGTGATGTTGGT
TGTGAAGATGATCAGCTATATAAACAGGCAAATGAACACTCTTTGCGGGTCTGCGATAGT
GAACAGCAGACAGATGAAAGCCAACAGAAAATGGATGAATTGTCAACTGTGGAGAGTGGA
AGTAATTATTCTTCACGAAGAGATGATGATACTGTGATGAGTGGGCG

Homology of Contig U35_37779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38900.1	651	6e-106	protein\|erythronate-4-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g31947.1	578	7e-115
Arabidopsis v10	AT1G01510.1	636	2e-80	\| Symbols: AN \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:187235-189836 FORWARD LENGTH=636