barSeed - Barley Seed Development Database

Probe CUST_15365_PI390587928

Source Contig U35_49751

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15365_PI390587928	Hv_44K_v2	GCCTGATCAGGAGAAAGACAAGCCCTATGTCGGCATCATCAAGGATATAAATGAAATTGA	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374338	1913	2e-24	519 - 578	100	60 / 60	plus	ABC07814
Harvest21	ABC51647	523	3e-25	464 - 523	100	60 / 60	plus
Harvest35	U35_49751	523	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_49751 523 Hv_44K_v2
GAATCGGTCGCCACGAAGAAATGGCAAAGCGCCGCCGGTTCGCGCTGCAGTACATCAGCG
ACGGCGACGACGAGGACGAGGACGACAATGCTGCACCCGAGGCGCCCAAACCCACAGTCC
CCGACTCCTCGCGCCACAAGAAGCAGCAGCGCCGCTACCGCGACGATGATGACGCCGAGG
CGGACCTGGAGCTCGCGGAGGAGGGAGACGATGAGATGAGGAACAACGAGGAGGAGGAGA
CGCAGGCCCGCCGCCGCTGGGGCCGCAAGCCCGCGCGCTCTGCTGAGAACAGCGACGGGG
AGCTGGGCCACAAGGCGGAAGCGGATGGGGAGGGGGACGACGGAAATGGTTCGGATGCGG
TGCCCTTGGGCAACCCCGTGGAGGTTCCTGGCGAGGGGAAGCACTATACCTCCTTCGAAT
ACGAGGGCAATATCTACAAGCTCGAGGATTCGGCGATGTTCTCGCCTGATCAGGAGAAAG
ACAAGCCCTATGTCGGCATCATCAAGGATATAAATGAAATTGA

Homology of Contig U35_49751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None