- Probe CUST_15362_PI390587928
- Source Contig U35_49754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15362_PI390587928 | Hv_44K_v2 | TGAATCTGAGCTCAATATTGGTCGCTCCAAACTTAAAGAATGTGACTCACAAATAAACAG | 483 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.268 | 1.265 | 1.061 | 0.785 | 0.427 | 0.377 |
| Raw | 798.988 | 1213.475 | 904.640 | 1002.661 | 200.406 | 195.817 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370669 | 4073 | 7e-23 | 2727 - 2786 | 98 | 59 / 60 | plus | ABC25030 |
| MLOC | MLOC_4644.2 | 1325 | 7e-23 | 1076 - 1135 | 98 | 59 / 60 | minus | ABC25030 |
| MLOC | MLOC_4644.3 | 3745 | 7e-23 | 920 - 979 | 98 | 59 / 60 | minus | ABC25030 |
| MLOC | MLOC_4644.4 | 3760 | 7e-23 | 935 - 994 | 98 | 59 / 60 | minus | ABC25030 |
| MLOC | MLOC_4644.1 | 3641 | 7e-23 | 1290 - 1349 | 98 | 59 / 60 | minus | ABC25030 |
| JLOC1 | JLOC1_2920.2 | 3618 | 4e-23 | 2300 - 2359 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_2920.1 | 3633 | 4e-23 | 2300 - 2359 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC51651 | 546 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49754 | 546 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus |
Contig Sequence (546 bp)
>U35_49754 546 Hv_44K_v2 AAAGTACGCTGAGTTGAAATCTCAGTTTGAACTCAAATCATATGATCTGTCATTATTTCA AAGCAGAGTTGAACAAAATGAACATCACAAGTTAGGTGAACTTGTGAAGAAACTTGAGCA AGAACTCCAGGAATCAAAAGAAGAATTGAAGGAAAAACAGGTGGAGCATAAAAAATGTGT CTCCACTGTTTCTGATTTGGAAAAGACAATTAAGACTTATGGCAGTGAACGTGAAGGTAG GCTCAAAGCTCTAGAAAAAAAGATAAAGTCATTGAAATCGGAAATGCAGGCCATGTCGGA TCAATTAAAGGCTTATCAAAGCGAGAGGGAGAGACTTATTATGGAGAAAGATGCAGTTGC TAATGAACTTGCTACGCTTGAAGAGCAATTGATAACTTCGAAAGCCCAGATTACTGCACT GTCTGAAACCTGGGGCACACATAAGAGCAAGGTTGCTGGCACGAAGCTAGAGTATGACCA AGCTGAATCTGAGCTCAATATTGGTCGCTCCAAACTTAAAGAATGTGACTCACAAATAAA CAGTAT
Homology of Contig U35_49754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g67740.1 | 1176 | 1e-72 | protein|chromosome segregation protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g57967.1 | 1176 | 1e-75 | |
| Arabidopsis v10 | None |