barSeed - Barley Seed Development Database

Probe CUST_15361_PI390587928

Source Contig U35_49757

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15361_PI390587928	Hv_44K_v2	AGAATTTGGAGTTGATAGCTGACTACGTTATGGTATGCTTGCACTCTTTTCAAGTGGATA	377	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371305	3251	7e-23	1788 - 1847	98	59 / 60	plus	ABC04225 ABC04227 ABC04741 ABC38469
MLOC	AK364404	3071	7e-23	926 - 985	98	59 / 60	plus	ABC15701 ABC22231 ABC31461 ABC31966 ABC36951
MLOC	MLOC_53624.1	492	7e-23	37 - 96	98	59 / 60	plus	None
MLOC	MLOC_30927.1	220	7e-23	128 - 187	98	59 / 60	minus	None
MLOC	MLOC_26913.1	225	7e-23	40 - 99	98	59 / 60	plus	None
MLOC	MLOC_678.1	266	7e-23	183 - 242	98	59 / 60	minus	None
JLOC1	JLOC1_20399.1	113	4e-23	21 - 80	98	59 / 60	minus
JLOC1	JLOC1_417.1	267	4e-23	183 - 242	98	59 / 60	minus
Harvest21	ABC51655	440	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_49757	440	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (440 bp)

>U35_49757 440 Hv_44K_v2
CTAGTCTCTTGTTTTTGTTTTTGCCAAACAAGAAACAATAGAAGCAATATGCCTACGTCG
ACTCCCTCAAGCTCGCCGGAAACGGCAAGGAGGTCTGGGTCTTCGACATCGACAAGACCA
CCCTCTTCAGCCTCCCCTACTACGCCAAGCACGGCTTCGGGTACGTACTTACACTCTTGT
ATACATTACATACACACTCTAGTGCATTAGACTTCCGATCGAGCAGGGACTTGCACTCAT
CCGATCGTCACTAGAAGCCGCATTGATAAACACTAGATATATCTTAAATGGTTCCTGTGG
ATATTGTGGTCATGAGTTATGTGTGGTGTGCCATCGCAGAGATGATTGTGTGTTTCTTGA
AGGTCCTTCGGGCGCCAAGAATTTGGAGTTGATAGCTGACTACGTTATGGTATGCTTGCA
CTCTTTTCAAGTGGATATGC

Homology of Contig U35_49757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None