- Probe CUST_15355_PI390587928
- Source Contig U35_37788
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15355_PI390587928 | Hv_44K_v2 | TCTTGTATGCGCTGTTACTCTTGAGATGCATCTGAACCGACACAATCCTTTTCGTCTAAA | 14 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.934 | 1.748 | 1.161 | 0.731 | 0.340 | 0.393 |
| Raw | 3475.327 | 5001.803 | 2868.280 | 2890.492 | 467.056 | 581.374 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55271.1 | 3229 | 7e-23 | 97 - 153 | 100 | 57 / 57 | minus | ABC21628 |
| JLOC1 | JLOC1_35637.1 | 3357 | 4e-23 | 3191 - 3247 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC21628 | 660 | 1e-23 | 493 - 549 | 100 | 57 / 57 | plus | ABC21628 |
| Harvest35 | U35_37788 | 566 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_1195 | 608 | 1e-23 | 415 - 471 | 100 | 57 / 57 | plus |
Contig Sequence (566 bp)
>U35_37788 566 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGACGAAAAGGATTGTGTCGGTTCAGATGCATCTCAAGAGTAA CAGCGCATACAAGAAATCTGGAAGAAAATAACAACAAAATCGCTTCCTGCGCTAAATTAG ATTACTACTACTATTGCAGCACTCTAGAGCAACTCTACTCCTGAGTGCAATAAACATAAC ACCTCCATCCGCATCAGTATTTGGTCGAAGATGACGCTGTGTGAAGTGTTTCACGCATTT CATATGATCACTCTTGTATTCCGGTGTGTGGCCATGAAGTGGCAAAAAGGCGGTTAAAAT GGGGCATGACGAGGTCACCAGGGGCATGCCTGTTTCTATCTCCAGCGCACAGGAAGGGAG TGGACGAACGTAACTGCGGCGGCAACATGATCAACTTATCACCTCCTCCTTTTTTTGCCT TTTCCCAGCTGCCCACATTTAAAAGCGCTTTCTTGTTCTTGGAGGAAAGCCAATGCCTTG CCATACTTTTCAGACCTCTCTTGCTCGAGTCTCATCCTATCCTTCTCTTTCACAGCAGCC AGGAAATAATTGTCTTTACGGAGCTC
Homology of Contig U35_37788 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |