barSeed - Barley Seed Development Database

Probe CUST_15348_PI390587928

Source Contig U35_37791

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15348_PI390587928	Hv_44K_v2	TGGTAGCAGATTTTGGTTGTGCTACAGGTTTTGGCTATATTATGAGATCTTGAAAAGTGC	33	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69126.4	1123	7e-23	8 - 67	98	59 / 60	minus	ABC06101 ABC33492
MLOC	MLOC_69126.1	2437	7e-23	38 - 97	98	59 / 60	minus	ABC06101 ABC33492
MLOC	MLOC_69126.3	3106	7e-23	14 - 73	98	59 / 60	minus	ABC06101 ABC33492
MLOC	MLOC_69126.2	3123	7e-23	38 - 97	98	59 / 60	minus	ABC06101 ABC33492
MLOC	MLOC_69126.5	2416	7e-23	8 - 67	98	59 / 60	minus	ABC06101 ABC33492
MLOC	MLOC_69126.6	2063	3e-21	2001 - 2060	97	58 / 60	plus	ABC06101 ABC33492
MLOC	MLOC_25744.1	112	3e-21	2 - 61	97	58 / 60	minus	None
JLOC1	JLOC1_45795.12	1644	4e-23	1567 - 1626	98	59 / 60	plus
JLOC1	JLOC1_45795.11	2356	4e-23	2279 - 2338	98	59 / 60	plus
JLOC1	JLOC1_45795.10	1072	4e-23	995 - 1054	98	59 / 60	plus
JLOC1	JLOC1_45795.9	2427	4e-23	2350 - 2409	98	59 / 60	plus
JLOC1	JLOC1_45795.8	3113	4e-23	3036 - 3095	98	59 / 60	plus
JLOC1	JLOC1_45795.7	1143	4e-23	1066 - 1125	98	59 / 60	plus
JLOC1	JLOC1_45795.6	1081	4e-23	1004 - 1063	98	59 / 60	plus
JLOC1	JLOC1_45795.5	3104	4e-23	3027 - 3086	98	59 / 60	plus
JLOC1	JLOC1_45795.4	1141	4e-23	1064 - 1123	98	59 / 60	plus
JLOC1	JLOC1_45795.3	2418	4e-23	2341 - 2400	98	59 / 60	plus
JLOC1	JLOC1_45795.2	1582	4e-23	1505 - 1564	98	59 / 60	plus
JLOC1	JLOC1_45795.1	1134	4e-23	1057 - 1116	98	59 / 60	plus
Harvest21	ABC33492	579	3e-25	34 - 93	100	60 / 60	minus	ABC33492
Harvest35	U35_37791	579	3e-25	34 - 93	100	60 / 60	minus

Contig Sequence (579 bp)

>U35_37791 579 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTGAAGCACTTTTCAAGATCTCATAATATAGC
CAAAACCTGTAGCACAACCAAAATCTGCTACCAAACCTGTAGCACAATCTGGTACAAAAT
TACACAACCAAGTGCACAAAATCTACTACCAAACCAAGTGCTATCACAAAATCTGCTACC
AAACCAGGTGCTATCACAAAATCTGCTATCAAGTGCACAAAAACTACTACCAAAATCTGT
TTTGCTTGATGCGCGATGCTTGGTCAGAACTTCTGCAACAATTGAAAAAGAAGACTTTCG
CTCTTCGCCTTCTTGTACATTAGCAGTCATCTTCTCTTCCATCTCAGTATGAAAGATAAT
GGAGGGGGGAAGAGAATGGTGACCACCAGAGAGAAGATGATGGCATAACTGACCTTGAGA
AAAACCTGCATTTGCTATAACAGTTGTAAGTCTTGACGAGCAGAAACACAACAGACAGAG
GAAGTTGTTGCCAGTGCTACATACTTGGAGTAATAAAATGGAGTAAGCATCATGATTTCT
TAAAAGGAACTTTCCAGCTAATCTTAAGTATGCATATTC

Homology of Contig U35_37791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None