barSeed - Barley Seed Development Database

Probe CUST_15345_PI390587928

Source Contig U35_37797

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15345_PI390587928	Hv_44K_v2	GATGGATCAACCAGTTGCTGAATCTTATTATCTTAAGTAGATTTATGTTGAACCAGCTCC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356141	1007	2e-24	941 - 1000	100	60 / 60	plus	ABC33502
MLOC	MLOC_37587.1	677	2e-24	615 - 674	100	60 / 60	plus	ABC33502
JLOC1	JLOC1_24346.1	848	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC33502	630	3e-25	547 - 606	100	60 / 60	plus	ABC33502
Harvest35	U35_37797	630	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_37797 630 Hv_44K_v2
GGCTGCAGGCTCGCCGCGGGAGCGTGGATCGCCTCCGGGGCCGCGCCCGTCGGGGTCGAG
TCGGCCGCGTTGGTGCAGGGCGTGGCGGCGTTCGCGTTCCCCTTCACGGCCGCTCTTGTG
CTTCGCCGTCTCATCAAGCCCGTCGCCTTCTTCCAGAAGATGGAGGCCAACGGGAGGCTG
CAGGTGCTCACGCTTTGCCTCCAGGCCACGAAGAACGTTAACCTCATGATGCTAAGGACG
CGGGTGGTCGCCATCTCTTGCGCCCTCGGAGTGTCGGTCGGGTCGGTGGCTACGATCTTG
ATGCGGTAAGCTTGTGCTAGGCTCTGCCCAGGAAGGATGGTTAGTGTCAGTTTTAGAGGA
GGAATAAGACTGAAATGGTGATATGAGATTCGACCTTGAAACTCTGAAAAATTGGTGCTT
TTGGATGTTGAAGTGTGCTTAGTTTTGGTACTTGTATGATTTACATATTACATGGGTACG
AAAGGAGTCTTTAAAGTGACGGTTTGGACTGTTGCTATTACAATGATATTCCTCTAATGT
TAGATGGATGGATCAACCAGTTGCTGAATCTTATTATCTTAAGTAGATTTATGTTGAACC
AGCTCCATTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_37797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None