- Probe CUST_1533_PI390587928
- Source Contig U35_30248
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1533_PI390587928 | Hv_44K_v2 | TTCTGGGCCCTAAATATGCAGTAGTCACTGTCGAGCTTATCCTATGTAAACTTTGAACCT | 437 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.152 | 1.975 | 1.113 | 0.769 | 0.263 | 0.204 |
| Raw | 201.594 | 303.649 | 144.361 | 161.158 | 18.794 | 16.137 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_32747.1 | 2702 | 2e-24 | 2537 - 2596 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_32747.2 | 2445 | 2e-24 | 2300 - 2359 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_21306.1 | 2664 | 8e-25 | 2527 - 2586 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30062 | 500 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30248 | 500 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus |
Contig Sequence (500 bp)
>U35_30248 500 Hv_44K_v2 GTTTGGTGAATCCACAATACATGAAAGTGCCACCTGTTCATGCAACAAACCACAGTTGCT TCACAAGCCCTGCACTCATGTCATCGCCGTCTGTTGTCAGATTGGGGTGAGCACTGCTAA ATACATGTCTCCATACTACAGCCTGGCCTACCTAGGTAGGATCTGGAGTGGAAATTTTGA TGAATATAAGATCTCACGCAGTTACAGAAATATCACACCATTTGAATGCAATACAACAAC TTGGATCCCAGACAAAAGATTGGAGCGTGGTCTTCCTGTTTTTGTAACATCGGACTGCCT AGAAACTGCTGCGGATGAGTCAGAGCAACAACGCAATGCTGGAAATGGATCAACTGAAGA CAATCAAGGAGCGGCTACACGCACTGAAGAACCTAATGAGATTTAAGCTTCTGTTATCAC CTATCAAGCTATTAATGTTCTGGGCCCTAAATATGCAGTAGTCACTGTCGAGCTTATCCT ATGTAAACTTTGAACCTCTG
Homology of Contig U35_30248 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |