barSeed - Barley Seed Development Database

Probe CUST_15338_PI390587928

Source Contig U35_49778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15338_PI390587928	Hv_44K_v2	AGCCCCTCAATACTACGGGGAAAATATGCAGGCTATACATGAAACATAATATAATTCTAC	79	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72672.1	928	2e-24	107 - 166	100	60 / 60	plus	ABC07428
Harvest21	ABC51685	639	3e-25	80 - 139	100	60 / 60	plus
Harvest35	U35_49778	639	3e-25	80 - 139	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_49778 639 Hv_44K_v2
GGATCAAAGCACGAGTTGCACGTGTGAAAATTTTGACCATGTTAGGAAATATACATGTAT
GAGTAGGAAATATGCAGGAAGCCCCTCAATACTACGGGGAAAATATGCAGGCTATACATG
AAACATAATATAATTCTACCAATAAGCATCTTAATTTTATTTTTCTTTATGTTCAACAGA
TTATTGGCTTGAACAATGTACCCCTTGCTGGTGACGAATTTGAGTCTGTCGATGACCTTG
ATGTTGCACGCGAAAGGGCAAACGCACGTGCCGATGCAATGAGAATTGAAAGGATACATG
CGAAAGCAGGGGAAGGAAAAGTCACTCTCTCATCCATTGCAGCCTCCGTTTCATCTGGGA
ATCAAGCAGGGATTGATACGCATGGGTTAAATGTCATACTTAAAGTTGATTTTCAGGGTT
CAATTGAGGCCATTAGGCAAGCCATTCAAGCACTGCCTCAAGAAAATGTCTCCTTGAGAT
TCCTACTTCAAGCTCCAGGAGACGTGAGCCTCAGTGATGTTGATCTGGCTGTTGCTTCGG
AAGGAATTGTATTTGGTTTTAATGTCAAAGCTCCGGGATCAGTTAAGAAATATGCTAAGC
AGAAAAGTGTGGAGATTCGATTGTACAAAGTGATATATG

Homology of Contig U35_49778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49970.2	548	3e-86	protein\|translation initiation factor IF-2, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g20520.1	966	6e-90
Arabidopsis v10	AT1G17220.1	1026	6e-65	\| Symbols: FUG1 \| Translation initiation factor 2, small GTP-binding protein \| chr1:5885383-5890165 FORWARD LENGTH=1026