barSeed - Barley Seed Development Database

Probe CUST_15321_PI390587928

Source Contig U35_8707

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15321_PI390587928	Hv_44K_v2	TGAAAAATTGGCTGGCAGCAGGCTTGTATTCTGATGTGCAAGAGAATGGTGGCAATGACA	1225	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.274	1.139	1.315	0.950	0.605	0.526
Raw	161.790	196.687	227.498	236.208	56.844	55.146

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362989	2285	7e-23	1311 - 1370	98	59 / 60	plus	ABC14346
MLOC	MLOC_37482.1	2827	7e-23	193 - 252	98	59 / 60	plus	None
JLOC1	JLOC1_24273.1	508	4e-23	193 - 252	98	59 / 60	plus
Harvest21	ABC18542	1295	3e-25	1226 - 1285	100	60 / 60	plus
Harvest35	U35_8707	1297	3e-25	1226 - 1285	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_8707 1297 Hv_44K_v2
GCCCAAACTCGTCGCCTCCCAGTTCCCGGTCTTTTGTTCCTCACAAGTTCGTCGCGCCAA
CGACTCTACAAGCCAGCCCCGCTGGTACTGCACTGCCGTGGATCGGTCCTTCTGCTGCTG
CCGCCGGTCCTCCCAATTCAGTCCGTCGCGAGATCGATCCCCTCAGGGCGCGGCGCGCAG
GTGACGGAGCGGCCTATTTCCAAGTATTTCATCTCTGGGTGCTAGCAAGAGACGGATAAG
ATGAAGCGCAAGCGCAGCCGCACGCCGGGCAAGAAGAGTTCTTCGAATTCCACCGGGGCA
GACTCTTCGTCGGCATCTCCGTCCAGCCCAAGCACCGAAGAGAACATCGCAGCGGAGAAT
GCGCCTGTCTCGGGCTCCACCCCGGCAGTGCCCGATCCATCTCTTCCTCCTGTACCGGAG
AAGCCGAGCGTCCTTGCCCCAGGTGTGGCTCATCCTGCCGCTGATATACCGTACGCCAGG
CTCAAGGTGGGGGCAGTGTACGGTCGTGTGAAGCTGAAGTTCAAAACCTCCAAGGCGTCA
GAGCTCAGCAATAGTTCGTCGGTAGCACAGGCACCCGCCACTGCTGGTAAATCTCAGACT
GCCGCCCCTGAAGTGAGCAACCAAGTTACCGCCGAAAAAGGCATCGCTGCATCCTCAGAT
GGCCAGACAACTGATGGGCAAGAGTCGGAGTTGAGTGGTTCTGATAAGGACAAGGTGGCA
AAGAAAGTAGGAAGCATAAAGATCGTGTCCGCGGGATTATCTTCTTCAGCACAAGATAAA
ACCCAACACATGGAGGTTGATGAAGTAGATGAATCTCTTCCAAGTAAACAGGAACCTGTT
TTAGTCACCGAGGAAAGCGAGAGTGCATCGGAGCCAAAGAACTCGCAAGGGTCGGAGATA
AAGCAGTCTGCCCTTGAATCTCAGCGCGATGAGAAAGAGTTGGCTGCTGCACTTGAAGCT
ATCAAGAAGGTTATGAAGGTCGACGCAGCTGAGCCATTTAACACCCCAGTTGATCCTATT
GCTTTGGGAATACCTGATTATCTTGATGTTATCGACACTCCTATGGATTTTGGCACAATA
TGTCAAGATTTAGAACGTGGAAGCAAATATATGAACTCAGAGGATGTCTATAAGGATGTG
CAGTTTATATGGGATAACTGTACCAAGTATAACAGTAAAGGTGATTACATAATAGAGCTT
ATGAAACGGGTAAAGAAGGCCTTCATGAAAAATTGGCTGGCAGCAGGCTTGTATTCTGAT
GTGCAAGAGAATGGTGGCAATGACAACATTGGTGACG

Homology of Contig U35_8707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g24870.1	379	4e-114	protein\|bromodomain domain containing protein, expressed
Brachypodium v1_2	Bradi3g13380.1	594	1e-138
Arabidopsis v10	None