barSeed - Barley Seed Development Database

Probe CUST_15320_PI390587928

Source Contig U35_8708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15320_PI390587928	Hv_44K_v2	AACTCAGGTTCGATTTGCGCCAAATCAACAGAGTAAACTCATTTCTGCGTCAGTCGATGG	685	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70530.1	1585	2e-24	658 - 717	100	60 / 60	plus	ABC14852
MLOC	MLOC_70530.2	1530	2e-24	615 - 674	100	60 / 60	plus	ABC14853
MLOC	AK366848	1650	7e-23	690 - 749	98	59 / 60	plus	ABC14852
JLOC1	JLOC1_46807.2	1647	8e-25	655 - 714	100	60 / 60	plus
JLOC1	JLOC1_46807.1	1651	8e-25	659 - 718	100	60 / 60	plus
Harvest21	ABC20997	746	3e-25	687 - 746	100	60 / 60	plus
Harvest35	U35_8708	745	3e-25	686 - 745	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_8708 745 Hv_44K_v2
GCTTCCTCGCCGCGCGCCGCCGCCGCCGCCGCCGCACCTGCCGCGACCTCTCCTCTCCCG
CCGCTCGCCGCCCGCTGCCCGAGCGTCAGGCGCTCACCCCCGCTCGCTGCCCGTCCGCCC
GCTACCAGCCAAATCAAAGGGCCTGCGCGATGGAGGTTGGCAAAGATTGGGACGATTCGG
CCATGGAGGTGGAGGTCGAGGCGGAGGCGGCCTCCGGTTCCCCTGTCCCGGGCGGCTCGG
CGAGGCGGCTGGGCCTCAGGAACAGCATCCAGACCAACTTCGGCGACGACTACGTCTTCC
AGATAGCTTCTTGCCAGGAGATCTCAACGCTCGCGGTTTCTCTGTCGACAAACGCGCTCA
AGCTCTATTCCCCAGCAACTGGACAGTATCTGGGGGAATGCACAGGCCATACAGGGAGTA
TCCATGAGATTGCCTTTTCAGCTCCGTCTTCGCCGCAAGTGCTATGCTCTTGCTCTGCTG
ATGCCACCATCAGAGCCTGGGACACAAGAAGCTTTAAGCAGATATCTTTGCTAAATGGTG
GCCCCTCGCACGAAATGTTTAGCTTCTCCTTTGGTGGAACAAGTGGTAACCTACTTGCTG
CTGGTTCGAATTCCAAGGTTCTGTTGTGGGACTGGAGAAGTTCAAAACAGGTAGCCTGCT
TAGAGGAATCCCACATGGACGATGTAACTCAGGTTCGATTTGCGCCAAATCAACAGAGTA
AACTCATTTCTGCGTCAGTCGATGG

Homology of Contig U35_8708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19590.2	264	1e-102	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi5g01990.1	418	4e-103
Arabidopsis v10	AT2G47790.1	392	1e-72	Transducin/WD40 repeat-like superfamily protein \| chr2:19571102-19572946 REVERSE LENGTH=392