barSeed - Barley Seed Development Database

Probe CUST_15319_PI390587928

Source Contig U35_8709

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15319_PI390587928	Hv_44K_v2	GGTGCAAGGAATGATGGAGGAGGTGATATTTGATCACTTGCATACCGCAGCATTCCGAGA	624	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.639	1.537	1.118	0.717	0.343	0.295
Raw	182.933	152.341	109.131	103.857	18.303	16.627

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81236.1	1877	2e-24	709 - 768	100	60 / 60	plus	None
MLOC	MLOC_81236.2	1689	2e-24	622 - 681	100	60 / 60	plus	None
JLOC1	JLOC1_54056.1	2079	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC18025	684	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_8709	684	3e-25	625 - 684	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_8709 684 Hv_44K_v2
AAGACTCCTCGCCCCTCTTCCCCTCTCCTTTGCGGCGGCGCGACGGTAGTGGAAGAGGAA
CTCCATCCAACACATGGCCGCCGCCGCCGCCGCCGTGCGCTCGAGGCGCAGGCTCCTGCC
GCACCTCTACCGTCTCCTCCACTCCGCCGCCGCCCCCTCGCCCAACCGCTTCCTCCGCCA
CGCGTCGCCGCTGCCCCGCGCCGCCGACCACTCCCCTTTCCTCGGCCTCCCCGCCGCGCG
CGTCACCACGCTCCCCACCGGCCTCCGCGTCGTCACCCAGGCCTACCCGGCCGCCACCCG
CATGGCCTCCGTCGGCGTCTGGGTCGACGCCGGCAGCCGCTTCGAGCTGCCCGGCACCAA
CGGCACGGCGCACTTCCTCGAGCACATGGCTTTCAAGGGCACCGAGCGCCGCCCCAACGC
CTACGCGCTCGAGGTGGAGATCGAGGACATGGGCGCGCGCCTCAACGCCTACACCTCCCG
CGAGCAGACCACCTTCTTTGCCGACGTGCAGGGCCGCGACGTGCCCGCCGCGCTGGACGT
GCTCAGCGACATCCTGCAGCACCCGCGCTTCCCGCAGCAGGCCATCCAGCGCGAGCGGGG
CGTCATCCTCCGCGAGATGGAGGAGGTGCAAGGAATGATGGAGGAGGTGATATTTGATCA
CTTGCATACCGCAGCATTCCGAGA

Homology of Contig U35_8709 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51390.1	506	3e-94	protein\|mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g47987.1	500	9e-101
Arabidopsis v10	AT3G02090.2	535	3e-54	\| Symbols: MPPBETA \| Insulinase (Peptidase family M16) protein \| chr3:365624-368534 FORWARD LENGTH=535