barSeed - Barley Seed Development Database

Probe CUST_15313_PI390587928

Source Contig U35_8715

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15313_PI390587928	Hv_44K_v2	TATTCCACGGCAACGAAGTGCAGAAGCTATTGTGTCTGATATAATTTCCTCTCATTTTCC	1106	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.511	0.698	1.223	1.833	1.100	1.135
Raw	69.806	149.386	228.554	551.015	113.506	128.065

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375814	1753	2e-24	1249 - 1308	100	60 / 60	plus	ABC39056
MLOC	MLOC_14591.1	1405	2e-24	916 - 975	100	60 / 60	minus	ABC39056
MLOC	MLOC_14591.2	1489	2e-24	1000 - 1059	100	60 / 60	minus	ABC39056
JLOC1	JLOC1_9961.4	1451	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_9961.3	1458	8e-25	439 - 498	100	60 / 60	plus
JLOC1	JLOC1_9961.2	1363	8e-25	344 - 403	100	60 / 60	plus
JLOC1	JLOC1_9961.1	1373	8e-25	354 - 413	100	60 / 60	plus
Harvest21	ABC16369	1481	3e-25	1107 - 1166	100	60 / 60	plus
Harvest35	U35_8715	1481	3e-25	1107 - 1166	100	60 / 60	plus

Contig Sequence (1481 bp)

>U35_8715 1481 Hv_44K_v2
CGCCCAACTCGCCGGCGGGATCACCCGAGCCGCCTTCTCCCGCCGTGCGCGACACCTCTC
CCCAGCCTGCGCCCGCCGCGTGCTTGCCCCTCTCGCCTCGCCGGGTGAGTCTAGCGGCGG
CAACTGGCTCGTTCCTGCCCGCGGCCACGGTGGCCACTCCGGCGACCGCGGCGAGGAAAG
CGGCGAGGCGTCTGAGAAGATCTTCCGTTTGGGCCTCGCTGCTGACGTCGTCCTCACCGT
AGGGAAAGCCATCACCGGCTACCTCTCCGGCAGCAGGGCCATCACCGCCGACGCCGCTCA
CTCCCTCTCTGACATCGTCATGGAAAGTTCGAGAGTTTAGGAGCTCTTGGAATTTCGAGT
ATGCTGTTGATTACCGCAGGTGGGATTGCCTGGCATTCTTTTGAAGTTCTTCAGGGAGTT
ATGTCTTCTGCTCCTGATATAATTGGCAGCACATCGCACATGAATCACAACCATGGTAGT
GGCGGGCATAGTCACGTAGTAGATTTGGAACATCCAGTCCTTGCATTGAGTATGACAACC
TTAGCGATATCTATCAAAGAAGGGCTCTATTGGATTACGAAAAGAGCTGGGGAGAAGGAA
GGGAGTGGGCTGATGAAAGCTAACGCATGGCACCATCGTGCAGATGCTATTTCATCTGTT
GTTGCCCTAATAGGGGTAGGTGGCTCTATTGTTGGATTACCTTATCTTGATCCACTAGCT
GGCCTTGTTGTCTCAGGCATGATTCTTAAAGCTGGTGTTGAGACAGGATATGAGAGTACA
CTAGAGCTTGTTGATGCAGCTGTTGATCCATCACTTCTAGAACCAATCAAGGAAACAATT
GTGAAAGTTGATGGTGTAAAGGGGTGCCATCGGTTGAGGGGAAGGAAAGCTGGAACCTCC
TTGTATCTTGATGTGCATATCGAGGTATATCCTTTCTTGAGTGTCAGTGCAGCACATGAT
ATCGGGGAAACTGTCCGTCATCATATACAAAAGACACATAATCAAGTTGCTGAAGTTTTC
ATACACATAGACCCCTCATATTCAATGGGTGCTAACATGAACAAGAAAAGGATTTTGGAG
AACTCGGAGAGAAGAAATTCAGACGTTATTCCACGGCAACGAAGTGCAGAAGCTATTGTG
TCTGATATAATTTCCTCTCATTTTCCAAAGAAAATGTGTCTTGAACACCTGATACTGCAT
TACTTGCAAGGACGGGTGTTGCTTCAGGTCCAAGTTTCAATGTCTCCAGAAATTTTGATT
CGGGATGCAATGCACATCGCAAAAAAAGCCGAGGAAGAGATCATGAAGGCTGATGCCAGC
ATATGCCAAGTCAGTGTACAGCTGAGATTGGGGCAACAAATTGAGCAACTTCAGCTGGCC
GCAAGCAAAAGCGGAGCAAACGATCTACAGGCGGAAAAGCAGTAGAGCGAATGGGCGCAT
ATCGTGTGCAGTACAGCTATGCTGACTCAGTCAGCTGGCAT

Homology of Contig U35_8715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22550.1	390	9e-140	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	Bradi1g62630.1	499	0.0
Arabidopsis v10	AT2G47830.1	471	7e-119	Cation efflux family protein \| chr2:19591094-19593973 REVERSE LENGTH=471