barSeed - Barley Seed Development Database

Probe CUST_15305_PI390587928

Source Contig U35_8724

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15305_PI390587928	Hv_44K_v2	CTACTTCATCTACACGGGCCACAACTCGTACCTGACCGGGAACCAGCTGAGCAGCGGGTG	343	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.647	0.448	0.638	2.516	2.309	4.420
Raw	5.184	2.501	8.345	50.146	16.385	34.147

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372605	2016	2e-24	421 - 480	100	60 / 60	plus	ABC18274 ABC22073
MLOC	MLOC_65618.1	2257	2e-24	1598 - 1657	100	60 / 60	minus	ABC18274 ABC22073
MLOC	MLOC_2280.1	770	2e-24	238 - 297	100	60 / 60	plus	None
JLOC1	JLOC1_43185.1	2209	8e-25	620 - 679	100	60 / 60	plus
JLOC1	JLOC1_1370.1	638	8e-25	458 - 517	100	60 / 60	plus
Harvest21	ABC51452	546	3e-25	210 - 269	100	60 / 60	plus
Harvest21	ABC49379	570	3e-25	437 - 496	100	60 / 60	plus
Harvest21	ABC30915	403	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_49620	546	3e-25	210 - 269	100	60 / 60	plus
Harvest35	U35_8725	570	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_8724	403	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (403 bp)

>U35_8724 403 Hv_44K_v2
CGACGTACAGGGTGTGCTGCTTCCTCCGGCGGTTCCGGCCGGCGTCCAACGAGCCGTCGG
AGGCCATCGGGGACGTGTTCCAGGCCTACGCCGGCGCCGACGGCGCGCTCGGGGAGGAGG
CGCTTAGGAGGTTCCTCCGGGAGGTGCAGGGGGAGGCCGGCGACGACGACGTCGAGGCGG
CGGCGAGGGAGGTCATGGCCTTCGCGGCGGAGCACCGGCTGCTCAAGAAGGGCGGCGGGG
GGCTCACCGTCGAGGGCTTCCACCGGTGGCTCTGCAGCGACGCCAACGCCGCCCTCCATC
CTCGCCGTGGGGTTCACGATGACATGGGTCTGCCGCTGTCGCACTACTTCATCTACACGG
GCCACAACTCGTACCTGACCGGGAACCAGCTGAGCAGCGGGTG

Homology of Contig U35_8724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None