- Probe CUST_15304_PI390587928
- Source Contig U35_8725
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15304_PI390587928 | Hv_44K_v2 | TGATATGGGTCTGCCGCTGTCGCACTACTTCATCTACACGGGCCACAACTCGTACCTGAC | 412 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.432 | 0.350 | 0.612 | 1.280 | 1.225 | 1.917 |
| Raw | 10.870 | 12.009 | 21.998 | 65.350 | 22.948 | 39.929 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372605 | 2016 | 2e-24 | 397 - 456 | 100 | 60 / 60 | plus | ABC18274 ABC22073 |
| MLOC | MLOC_2280.1 | 770 | 2e-24 | 214 - 273 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_65618.1 | 2257 | 7e-23 | 1622 - 1681 | 98 | 59 / 60 | minus | ABC18274 ABC22073 |
| JLOC1 | JLOC1_1370.1 | 638 | 8e-25 | 434 - 493 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43185.1 | 2209 | 4e-23 | 596 - 655 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC51452 | 546 | 3e-25 | 186 - 245 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49379 | 570 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC30915 | 403 | 1e-23 | 320 - 379 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_49620 | 546 | 3e-25 | 186 - 245 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8725 | 570 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8724 | 403 | 1e-23 | 320 - 379 | 98 | 59 / 60 | plus |
Contig Sequence (570 bp)
>U35_8725 570 Hv_44K_v2 GGGGATGTGCACCAGCTAGCTAGCCCTCGCAGACGAGCCAAACCAGAATCAGTTCACTCT AGCTAGCTGCCTGTACATAGAGAGCGAGGCCCATGACGACGTACAGGGTGTGCTGCTTCC TCCGCCGGTTCCGGCCGGCGTCCAACGAGCCGACGGAGGCCATCTGCGACGTGTTCCAGG CCTACGCCGGCGCCGACGGCGCGCTCAGGGAGGAGGCGCTCAGGAGGTTCCTCCGGGAGG TGCAGCGGGAAGCCGGCGACGACGACGTCGAGGCGGTGGCGAGGGAGGCCATGGCCTTCG CGGCGGAGCACAGGCTGCTCAAGAAGGGCGGCGGGCTCACCGTCAAGGGCTTCCACCGGT GGCTCTGCAGCGACGCCAACGCCGCCCTCCATCCTCGCCGTGGGGTTCACGATGATATGG GTCTGCCGCTGTCGCACTACTTCATCTACACGGGCCACAACTCGTACCTGACCGGGAACC AGCTGAGCAGCGGGTGCAGCGAGGTGCCCATCGCCAAGGCCCTCCGTGACGGCGTCAGGG TCATCGAGCTCGACCTCTGGCCCAACGCCG
Homology of Contig U35_8725 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g03610.1 | 599 | 4e-55 | protein|phospholipase C, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |