- Probe CUST_15301_PI390587928
- Source Contig U35_8728
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15301_PI390587928 | Hv_44K_v2 | CAAAGGGGAAACATTATTTCTACATATTTTTGATGTGGTTCAACTTTTCGAGAGAGGTAC | 578 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55872.7 | 3488 | 7e-23 | 3411 - 3471 | 98 | 60 / 61 | plus | ABC17093 ABC17276 |
| MLOC | MLOC_55872.6 | 3518 | 7e-23 | 3441 - 3501 | 98 | 60 / 61 | plus | ABC17093 ABC17276 |
| JLOC1 | JLOC1_36080.8 | 3229 | 4e-23 | 3083 - 3143 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.7 | 3470 | 4e-23 | 3324 - 3384 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.6 | 3299 | 4e-23 | 3153 - 3213 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.5 | 3091 | 4e-23 | 2945 - 3005 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.4 | 3246 | 4e-23 | 3100 - 3160 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.3 | 3498 | 4e-23 | 3352 - 3412 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.2 | 3347 | 4e-23 | 3201 - 3261 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_36080.1 | 3175 | 4e-23 | 3029 - 3089 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC17276 | 675 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | ABC17276 |
| Harvest35 | U35_8728 | 675 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus |
Contig Sequence (675 bp)
>U35_8728 675 Hv_44K_v2 GAACATTGTGAAGGAGGCTAAGAGAAACCGTGCAATTATTCTTACTACACACTCGATGGA GGAGGCAGAAGTACTTTGTGACCGACTTGGCATATTCGTCGATGGCGAGTTCCAGTGCCT CGGAAACCCTAAAGAGCTAAAGGCGAGATACGGGGGTGCATACATATTTACAGTGACAAC ACCTCCAGAGCAAGAGTCGGAGATTGAACAGCTAGTCCATCATTTGTCACCAAGTGCAAA CAAGATCTACAATCTTTCTGGCACTCAAAAGTTTGAGCTACCGAAGCAGGAGGTGAGGAT AGCCGGTGTCTTTCATGCAGTTGAGAGGGCGAAAAGCAGGCTCAGTATACATGCCTGGGG TCTCGTTGACACTACCTTGGAGGATGTCTTCATCAAGGTTGCCAACGGAGCACCGGTGTT CAATGATGTTGCATAGATTGCAACCTGGAGAGCGTCTTCGTCATGGACGGCCAAGGAACC CCAACCCCAAGCATTCCATGTGACTATGTAGATAATCTTGTGAGTTCATAGCATATAGGT TCTGTTAGGATAAACATTCATAGCATGTAGGGTTTTTTCAAAGGGGAAACATTATTTCTA CATATTTTTGATGTGGTTCAACTTTTCGAGAGAGGTACAAAAAGGAAAAAGAAAGACCAA AAAAAAAAAAAAAAA
Homology of Contig U35_8728 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g30770.1 | 958 | 3e-72 | protein|ABC transporter, ATP-binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g28617.1 | 908 | 2e-81 | |
| Arabidopsis v10 | AT5G61700.1 | 888 | 2e-60 | | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:24793864-24797944 FORWARD LENGTH=888 |