- Probe CUST_15287_PI390587928
- Source Contig U35_8743
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15287_PI390587928 | Hv_44K_v2 | TATGTCTCCGTACTATGGAGATGGGCAGTGAACTTTCCAAAACAGTGGCCACCTTTATTG | 594 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.101 | 0.305 | 1.554 | 2.252 | 1.193 | 1.115 |
| Raw | 86.619 | 362.503 | 1824.740 | 4047.237 | 784.894 | 783.444 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252610.1 | 1768 | 2e-24 | 710 - 769 | 100 | 60 / 60 | plus | ABC07312 ABC32563 ABC43434 |
| MLOC | MLOC_10826.6 | 1382 | 2e-24 | 410 - 469 | 100 | 60 / 60 | minus | ABC32563 |
| MLOC | MLOC_10826.5 | 879 | 2e-24 | 491 - 550 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_10826.4 | 967 | 2e-24 | 857 - 916 | 100 | 60 / 60 | minus | ABC07312 ABC43434 |
| MLOC | MLOC_10826.1 | 1840 | 2e-24 | 921 - 980 | 100 | 60 / 60 | minus | ABC07312 ABC32563 ABC43434 |
| MLOC | MLOC_10826.2 | 1921 | 2e-24 | 1002 - 1061 | 100 | 60 / 60 | minus | ABC07312 ABC32563 ABC43434 |
| JLOC1 | JLOC1_7114.3 | 2281 | 8e-25 | 1232 - 1291 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7114.2 | 2254 | 8e-25 | 1232 - 1291 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7114.1 | 2227 | 8e-25 | 1232 - 1291 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8743 | 736 | 3e-25 | 595 - 654 | 100 | 60 / 60 | plus |
Contig Sequence (736 bp)
>U35_8743 736 Hv_44K_v2 GCCACTGCCCCCTCCGCTCCCCGTCCTCAATGGCGAATCTGCCGCCGTCCCTCGCCGCCG GGCCCTCCTTCGGGGCGCCCTCGCCGCCCCCGCTCCCGCCCTCGTCCGGCTCGTCGGCCG CGCCGCCGCCCGCCGGGGGCAGGGACTGGAATATGGTGTCTGCAGAGCAGCTCGCGATCG ACATCTGCGACCCAGAACTGCGTGAGAAAGCCCTCTTCGAGCTCTTCAAGAAGCGAGAGA TTTTTCAAGATCTTGCTCCACTCCTGTGGCACTCCTTTGGCACCATTGCTGCACTGCTCC AGGAGATTGTGTCAATCTACCCTTCACTTTCACCTCCTACTTTATCGCCAGTTGCATCAA ACCGTGTCTGCAATGCACTTGCACTTCTTCAGTGTGTTGCTTCACACCCTGAGACCAGGA TCCCATTCTTGAATGCTCACATCCCACTGTACCTGTACCCGTTCCTGAATACTACCAGCA AGACAAGACCTTTTGAGTACTTGAGGCTTACCAGCTTGGGTGTTATTGGTGCTCTTGTGA AGGTTGATGATTCTGAAGTTATTGGATTTCTGCTTCAAACTGAAATAATCCCTCTATGTC TCCGTACTATGGAGATGGGCAGTGAACTTTCCAAAACAGTGGCCACCTTTATTGTTCANA AGATTCTGCTTGATGACATTGGGCTGCGCTACATCTGCGCGACTGCTGNAGCGTTCTTTG CTGTGGCCACTGTTTT
Homology of Contig U35_8743 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g57130.1 | 331 | 5e-115 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g06530.1 | 357 | 2e-118 | |
| Arabidopsis v10 | AT3G20800.1 | 316 | 6e-102 | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316 |