barSeed - Barley Seed Development Database

Probe CUST_15277_PI390587928

Source Contig U35_8754

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15277_PI390587928	Hv_44K_v2	ATGTTCTACGAAAGAACACAGCTGCTTTTTTCCCCACTCATAGTCTCCCGTCAGATGTGA	748	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250781.1	1726	2e-24	842 - 901	100	60 / 60	plus	ABC16599
MLOC	MLOC_74537.2	1832	7e-23	967 - 1026	98	59 / 60	plus	ABC16599
MLOC	MLOC_74537.1	2363	7e-23	1287 - 1346	98	59 / 60	plus	ABC16599
MLOC	MLOC_74537.3	2556	7e-23	711 - 770	98	59 / 60	plus	ABC16599
JLOC1	JLOC1_49672.3	1960	4e-23	710 - 769	98	59 / 60	plus
JLOC1	JLOC1_49672.2	1796	4e-23	710 - 769	98	59 / 60	plus
JLOC1	JLOC1_49672.1	1637	4e-23	748 - 807	98	59 / 60	plus
Harvest21	ABC17880	875	3e-25	749 - 808	100	60 / 60	plus
Harvest35	U35_8754	875	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_8754 875 Hv_44K_v2
GACGCGCTCATCGACGGCGTCGGGTACCTCCCCGCGCGGCCCCTGGGGGATCCTTGCAGA
GCTTGAGTACAGACGGTCCTGCGGGGTTCATCACCAGCTGTTAAAGAGTGACTCACTGAT
AAGAGACCAGAAGAGGCGGTAGTGGTAAGCTTGGAGGAGATGTACCGTGGTGGGCTTGAC
CGCTTCAAGAAAGCTCAGGCCTTGGAGCCCTTCTCGGTGCAGCAGTCTGGTTCCGGCGCA
AAGAGCGTGCCCGTGGCGGTGAAAGTGCAGCCAGCTCCATTGGTGCCGCCGCAAAGCTCA
CATCTTGGTCCCAGCCAGAGTCAGCATGCTCCGCAGAGTGCTGGCTCAAGCATCGCCGGG
CAAGAGGCTGCTGGGGCTCCCAGACCAGCCGTGACGCAGTTTGGTGGTGGGCAGTCGACG
TGGCAACCGCCGGACTGGGCAATTGAGCCGCGCCCTGGGGTTTACTATCTTGAGGTGATG
AAGGATGGGAATGCCATCGATAGGATCAATCTGGACAAGAAGAGGCATATATTTGGGAGG
CAGGTGCCTGCTTGCGAGATTGTCTTGGACCATCAGTCTGTCTCACGCCAACATGCCGCT
GTCGTTCCACACAAAAATGGAAGCATCTATGTTATCGATTTAGGATCTGTTCATGGCACA
TTTGTTGCGAACGAGAGATTAACCAAGGACAACCCTGTTGAGCTTGAAGTTGGACAGTCA
CTTCGCTTTGCTGCATCAACCAGAGCATATGTTCTACGAAAGAACACAGCTGCTTTTTTC
CCCACTCATAGTCTCCCGTCAGATGTGAGCTTGCCGTCTCCTCCAGACTCTGACGATGAA
GATGGCCGTTGTGGCATACAATACAATACTCAATC

Homology of Contig U35_8754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23680.1	422	2e-114	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g20620.1	423	4e-125
Arabidopsis v10	AT5G47790.1	369	1e-73	SMAD/FHA domain-containing protein \| chr5:19351396-19352579 FORWARD LENGTH=369