barSeed - Barley Seed Development Database

Probe CUST_15275_PI390587928

Source Contig U35_4320

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15275_PI390587928	Hv_44K_v2	GACATGTCGTCTTCCAGTGCTTGCATAGTGATTCATGTGTTTCTTTTCGCTTCGAAAAAA	1790	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.750	1.749	1.124	0.862	0.372	0.418
Raw	1211.123	1942.511	1065.360	1288.301	194.822	240.832

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52907.1	5176	3e-22	3840 - 3895	100	56 / 56	minus	ABC10129 ABC12040
MLOC	MLOC_52907.2	3918	3e-22	1741 - 1796	100	56 / 56	minus	ABC10129 ABC12040
JLOC1	JLOC1_33934.2	3082	1e-22	2069 - 2124	100	56 / 56	minus
JLOC1	JLOC1_33935.1	4732	1e-22	866 - 921	100	56 / 56	plus
JLOC1	JLOC1_33934.1	2798	1e-22	1785 - 1840	100	56 / 56	minus
Harvest21	ABC10129	1837	3e-25	1767 - 1826	100	60 / 60	plus	ABC10129
Harvest35	U35_4320	1861	3e-25	1791 - 1850	100	60 / 60	plus

Contig Sequence (1861 bp)

>U35_4320 1861 Hv_44K_v2
TAGTGGATCCAAAGCTGCCTATTCCCCATCGGCCGATAGGCGCAAGCGCCCCAGCGCCGC
CATCCGACCGCCGGCGCTGGTGAGGGCATCCTTCATCCCTCCGTCTAAATCCTCTGTCGT
TATTCCTCCTTGTCCACCAGCTCGGCCCCTCGGGTCTCTCTCCCATTTCCCCCCCAAAAC
CGACCGCGAAAAGCCGAAACCCTCGCCTCACCACCACCGCAGCAATGGCCGGAGAAGACG
CCGCCGCCGCGCTTTCCGCAGGAACCACGACGCTGCACAATCCTCTCAAGAAGGAAGTGG
ATGACGAAGACGACGAGGACAACGTGCCGCTGGCCTTCTCTCGGCCCAAGAAGAAAGCGA
GCGCGGCGAGTGCCTCCAAGGTCAAGAAGGAGGAGGAGGACGACGATGACGACGTTCCGC
TTGCGCGTTCTCGGGCCAAAAAGGCGAGCAATGGGGGTGCAAAGAAGGAGAAAAAGGTGG
AGTACGAGGAGGAAGAGGAGGATTACGAGGAGGAGGAAGAAGAAGACGACGACGACGAGG
ACGAATATGAGTACACTCCGATTTCGAGTTCAAGGGCCAAGAAGGGAAATGAGAAGCAGA
AAAGCACTAGCAATAGCAAGGTGAAGACTTCTAAAGTAAAGAAAGAAGAAACCGGTTCCG
ATGATGAATGCAAGAAGAGAAGTGCAGCTGCGAGTAAGCCCAAGGTCTCCAAGACTAAGA
AACCAAAAGATGAATATGATACAAAGGAGGAAAAGAAAATAAAGAAGGAAGTTGGTATCA
AGAAAGCTGAAAAGAAGGCTGCTGGGGTGAAGAAGGAGGGGGCTGCTGAGGTGAAGAAGG
AGGGGGCTGCTGAGGTGAAGAAGGAGGGGGCTGCTGCGGTGAAGAAGGAGAGGAAGGTGT
GTGAATTGCCAGGGCAGAAACATGATCCTCCTCCTGAAAGGGATCCACTGAGGATATTTT
ATGAATCACTCTATGAGCAGGTGCCCGATAGTGAAATGGCTGCATTCTGGTTGATGGAAT
GGGGTTTGCTACCGCTGGATGTGGCTACAGAGGTCTTTGCAAAGAGACAGGCTCTGAAAC
TGAAGTCCCCTGTCAAACCACCTTCTGCACCGAGAAGGGCAAGTTCTCCAACCAAGGTAC
GGCTGTTAGGTGACAAGAAAACCAACTCAGGTACAAAGGGAAAACCCATGGCGCCAAAGA
AGAGGAAGGCATCTAGCGACACAGATGACGATGACGACGATGGCTTTGTCAAAACCAACT
CAGCCACAAAGGGAAAAACCACAGCACAAAAGAAGAGGAAGGCATCTAGCGACACAGATG
ACGACGATGATGATGACTTTGTCAAAACCAACTCAGCCACAAAGGGAAAAACCACAGCAC
AAAAGAAGAGGAAGGCATCTAGCGACACAGATGACGATGATGATGATGACTTTGTCAAGA
CCAACTCAGCCACAAAGGGAAAAACCACAGCACAAAAGAAGAGGAAGGTATCTAGTGACA
CAGATGACGACGACGATGATGACTTTGTCATGTCTAAGAAGCCCAAGAAGCAAAAGATCT
CTAGCTAGGCATCTGATCATTAAACAAGGTGTGCCCTTTGTTTACCATTGACATTGTGCT
GGATCAGTATGAACGTTAGGAAACAATGAGTAATCGTAATCTTGATCTTGTCCTTCCATG
CACTGACGCTGTGATGAGTATGAACCTCTGGATCAAAACTATTGAGGTGTAGCAGTACCT
GCCCAGTGATTGGTATTTTGTGTCTTCCATCGTGAACCCTAGGAGAAGCTGACATGTCGT
CTTCCAGTGCTTGCATAGTGATTCATGTGTTTCTTTTCGCTTCGAAAAAAAAAAAAAAAA
A

Homology of Contig U35_4320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None