barSeed - Barley Seed Development Database

Probe CUST_15270_PI390587928

Source Contig U35_4325

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15270_PI390587928	Hv_44K_v2	GGTCGTTTCGTGTGGTCTTATGAAGAACTAATGCTGATCTTTTTCAGATCTTTTTCAAAA	1185	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.209	6.375	1.934	0.796	0.264	0.286
Raw	421.217	499.105	123.633	85.501	9.298	11.458

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24456.1	1375	6e-21	927 - 979	100	53 / 53	plus
Harvest21	ABC09558	925	3e-25	853 - 912	100	60 / 60	plus	ABC09558
Harvest35	U35_4325	1258	3e-25	1186 - 1245	100	60 / 60	plus

Contig Sequence (1258 bp)

>U35_4325 1258 Hv_44K_v2
CCCCCTCCACCACTGCCATCTCTGGAGTTGCAACTCCCATGGCGCTCTCCGGCCGGCTTC
TCCTCTTCCTCTCCCTCGTCGCCATGACGGCGGTCACCGGCACCTCCGAGATCATCGTGA
CCAGGTGCTACCCGCCGCCGACGCCCGCTGTCAACGCCAGCACCAGCACCAGCGCGTTCC
GCCGCGATCTCCTCTCGCTGCTCGACGCCCTCCCCTCGGCCGCCGCGCCGACGGGCTTCG
CCTCCATGCGGACCGGCGGCTCGTCCGCCCGCGGCCTCTGCTTCGGCGACCCCGCGCCGG
GCCCGTGCCTCCGATGCCTGTCCGACACCGCCAGGAAGATCGCCGACCTGTGCGACGACG
CGAACCGGCGCGCGGGCTTCCTGACCGACGGCTGCTTCCTGGGCTACGCCGGCACCAACG
CGTCCTCTGCCGGCGCGGACGACACCGACATCAGTGGCGCGACATTCTCCGGCGACGCCG
TCCCGCGCATCGACGCCGTCGACGTGCAGAGGCTCGTGGCCGTGGCGCGGTCCTTGGTCC
CGCTTTCCGCGAACGGCCAGGTGGCCGCCGCCGACGCGACTGCCACGGCGACCAACGGCG
ACACGGTGCGCGTGCTGGCGCAGTGCGCGACGGACCGCGCCCCGGCGGAGTGCGCCCGGT
GCCTGCGGGATTCGTCGCTGCTGATGGCCAAGAGCTGGGGCCTCACGTTCGCCGACGGCG
CCGTGCAAGGAAGTGTGGCCGAGGTTCTGGGCCCGAACTGCTACCTCCGCTTCCAGATAT
CGGCACCGCCGCCGCCCGTGGGAGAGAAGATTCGGAGGATGGTGAAGGATCACATCGTCC
TGACTGTGTGCATTGGCTTCATCCTCGCCGTGGCTATCGTCGTGCCGGTAGTTCATGCCT
GCCGCATGGTGACGAGGAAGCTCGCCGAGAATGCTGCTGCAGCACCAGCGGCGGAAGGGA
AGTCATGATCTGACCAGGAGGAGGAAGAAAACCAAACAGAAGGCATTGGCTGGAGACCTG
GAGTGTAACCAACTTCCTGCAGGAGCATTACTGTTATGTTGATCTGTTCTATACTTGGAT
GCTTGGTACTCCCTCGTTTAGATTACTAAAATAGTGAAGTACTTACTAGTTACTACTGCT
TTGTTCCATGATCTTCCATTAATCTTAACACTGTAAGTGGAACCCGGTCGTTTCGTGTGG
TCTTATGAAGAACTAATGCTGATCTTTTTCAGATCTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None