barSeed - Barley Seed Development Database

Probe CUST_1526_PI390587928

Source Contig U35_42226

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1526_PI390587928	Hv_44K_v2	AGGCCCTCTTGAGGATGAAAATCAAAGAGGTATGTCAAACTTTTACCACAGAATCTCATA	271	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	3.185	3.148	3.434	3.613	3.294	3.296

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60000.1	4304	2e-24	533 - 592	100	60 / 60	plus	ABC07752
MLOC	MLOC_60000.2	4232	2e-24	533 - 592	100	60 / 60	plus	ABC07752
Harvest21	ABC37751	638	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_42226	638	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_42226 638 Hv_44K_v2
GACCTAGGGAAATGTCACAACTTAGCATAGTCAGTTACCCTGGGGGCTAGTTGGCCATTT
GCCTCTAGTTTATGTTCTTCATTTGTGTATAAACAGATAATGTCCTGGTCTGTCTTTATC
TAATTTCTGGGGTACTGTGATTTAACTATTTTATTGGACTTCACTGTTAATTTTGCTTGG
TGCAAAAAGTGGGCCAGACTGTTATTGTTGGTAAAAGACCACTGAAGGGTCATGGAAGCG
TAATTATTCAGCTGGGAATTCCTATCATTGAAGGCCCTCTTGAGGATGAAAATCAAAGAG
GTATGTCAAACTTTTACCACAGAATCTCATATTATTATTCTCATATTCTGATGACTTCTT
TCTTTATTTTAAATGTGAGTTCAGAGACAAGGGTGGAGCCTGTTCCTGGGATGCTGCATG
ATCTGTTTGATCGCTTCTTTCGGCAGGGAATTGTACCTTCTAAGCCAGACTATTGTGTTG
TCGACTTCTACTGTGAGGAGGAATATTCTCATCCCCAGCAACCTCCATCTTGGTATGGTA
GACCACTTTGTACCCTCTGCCTCACAGAGTGTGATATGGTGTTTGGCCGAGTTATCTTTG
GAGAACGAGGTGATAACAGAGGCCCTTTGAAGCTCTCT

Homology of Contig U35_42226 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g68600.1	670	4e-66
Arabidopsis v10	None