barSeed - Barley Seed Development Database

Probe CUST_15262_PI390587928

Source Contig U35_4333

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15262_PI390587928	Hv_44K_v2	TCTGGATGTTCTACAATTTTGCTGAATAAATTGCATGCAAGCAATCAAAGCAATCCAACC	1704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249394.1	1575	2e-24	1468 - 1527	100	60 / 60	minus	None
MLOC	MLOC_48319.1	435	2e-24	178 - 237	100	60 / 60	plus	None
JLOC1	JLOC1_31048.1	436	8e-25	179 - 238	100	60 / 60	plus
Harvest21	ABC05968	3207	3e-25	1444 - 1503	100	60 / 60	minus
Harvest35	U35_4333	1782	3e-25	1705 - 1764	100	60 / 60	plus

Contig Sequence (1782 bp)

>U35_4333 1782 Hv_44K_v2
GGTGGAACCTATGGACGGAAGGTCAAGTTGTACAAAGTTGAAAAGCTTAGCAAGGAAGAA
TACAAAGAGGTGCCAGTAAAACTTGGGATTGAAGAGCCAAAGAAAGGGAGAAATGCGTGG
AATGGTATGAGGTACCATCACTTGGACGCGCAGCAACTTGAGTCTGGTAGTTGGATAGCT
GTAATGGATGGTGATCGTGTTCCTTCAGGCGATTCAACGCGAAGGTCCATCTCTGGTTAC
CTGGGTTTCTTGCTAGCCGTAGTTCTGGTCACTTTTGTGGGTTTTGTGAAAGGTGCAATC
AATTGCTACATTCCTCCAAGTTTCTGGGCTGCCACGGCAAGGAGAAATGAATTGTCCCGT
ATCTTGCCTGTCTACCGCTTGAACCAGAAAGTCCGCAGATATTCTACCAGCCTTGGCAGA
TATGTCACAGCAACCAAAGCCAGGCTCAACGAGAAAACATGGTCCAACAAGCTCTTCTTT
TGCGTGATCGCTCTCTTGGGGACCGTGAACATCTGCATCGCTGTGCATTTCTTACTTGGT
GGCAATGGCACGGAAGAGGCATACACACATCAAGGTCAGCGCTCTCAGTTCACAATGGTC
ACGATGACATATGAAGCTCGGCTCTGGAACTTGAAACTGTTTGTCGAACACTACTCCAGA
TGTGAGTCGGTCAGGGAGATAGTTGTTGTCTGGAACAAAGGCAACCCTCCAGGCAGTGAT
GCCTTCGACTCCACGGTGCCTGTCAGGATACGAGTGGAAGAGCTCAACTCTCTCAACAAC
AGGTTCAGAGTCGACCCTCTGATAAAGACCAGGGCTGTCCTCGAGCTGGACGACGACATC
ATGATGACGTGCAGCGACGTGGAGAAAGGGTTCAAGGTATGGAGGGAGCACCCCGAGCGG
ATGGTCGGCTTCTACCCGCGGATGATTGACGGCGACCCTCCGCAGTACAGGAACGAGCGG
TACGCCAGGGGCAAGAAGGGCTACAACCTGATCCTCACAGGTGCTGCTTTCATGGACAGT
GAGTTTGCTTTCAAGAGGTACTGGAGCGAGGAGGCCAGGGAAGGTAGGGACTATGTGCAC
AAGAACTTCAACTGTGAGGACCTGCTGATGAACTTCATGTACGCGAACGCGAGCTCCGGG
ACGGGGAGGAGGACCGTGGAGTACGTGCACCCGGCGTGGGCCATCGACACCTCCAAGCTC
TCCTCCGTCGCCATCAGCCGCGACACCCAGAAGCACTATGACGTGAGGACCAAGTGCCTG
GCCAAGTTCTCCTCCATATACGGCCCTCTGCCTCAGAAATGGGAGTTTGGCAGGCGACAA
GATGGCTGGGACAAATAGCCTGGACTCTGGACAGTGGGGGCGGGAAATAGTACACAGCCA
ACAGATGCAAATGCTTAGAACTTTTTTTGTTGGTGGTCTCGTGGGAAGTTTTGCAGCATG
GGACGGGGAATGCTATAACCTTGTTGGTAGAAGTGTCTATTAGATTTTGCTAGAAGCCTA
GAGTGCAGTAGATCAAGATCTGTTCCCAGTGTCTGATTCTCCAGGAACTTGTTGGATCAA
ATGCTCATATAGGCCAGCTGCAATGCGCTAAGATTCAATTGGGTCATATGCCTGTCGTTC
TTCTTTTCTCATAGATCTTCTTTTTGCACTTGTTTTCCAATTGTAAATGGTGTGGTTTTG
CTTGTGTACATTGCTAGGAATTCATCTGGATGTTCTACAATTTTGCTGAATAAATTGCAT
GCAAGCAATCAAAGCAATCCAACCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46260.1	883	0.0	protein\|exostosin, putative, expressed
Brachypodium v1_2	Bradi2g18300.1	746	0.0
Arabidopsis v10	AT5G04500.1	765	9e-158	glycosyltransferase family protein 47 \| chr5:1283604-1286155 FORWARD LENGTH=765