barSeed - Barley Seed Development Database

Probe CUST_15256_PI390587928

Source Contig U35_4339

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15256_PI390587928	Hv_44K_v2	GGTGAAAGTGTGAGTGGAAATTGTTTGATTTTGTTGAAGATAATGGGTGATGCACATAAA	2183	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371310	2280	7e-23	2224 - 2280	100	57 / 57	plus	ABC12622
JLOC1	JLOC1_25147.1	1737	1e-23	1637 - 1694	100	58 / 58	plus
Harvest35	U35_4339	2257	3e-25	2184 - 2243	100	60 / 60	plus

Contig Sequence (2257 bp)

>U35_4339 2257 Hv_44K_v2
CAGCACGCACAAAACACGCGACAACCACCACCACCGCCGTTCCCGTCCCCGTCCCCGTCC
CGTCCCGTCCCCAACCTCCAAAATTCCAGTTGTCTCTCCCGGCCGCGGCCGCGCCAGCTC
CCCCTCTCCTCCGCCCCTCCGCCATTCCCTCCTGCCCCCTCGCCAATTTTAAACGCGGCC
GCACCCCTTCCTGCGCCTGCACCCTCGGCGGCGATCCGGGGCCAGGCGGGCGGGCGCGAT
GGAGGCGTCGACGGCGTCGCCGCGGGTGCGGTCGATCCGGGAGACGGTGCTGGAGAGCGT
GGCGGCGTACCACCACCAGCAGCGGATGCGCCGCAGGTTCCGCAAGAGCCTCTCCTACGC
GGGGGAGCTCTCCTCCGCGGGCCGCGCCTCCTCCTCCTCCTCCTCCCCGTCCGCCTCCCT
CGCCTCGCTCGCCGGGCCCGAGGACGACGACGAGCCCTTCTGGGAGGAGGAGGAGGGCAC
CGTCGAGCTCGTCCAGCTCGGCGCCAACCGCGCCAAGAACGTCCTCATCCTCATGAGCGA
CACCGGCGGCGGCCACCGCGCCTCCGCCGAGGCCATCAAGGACGCCTTCCGCATCGAGTT
CGGCGACGACTACCGGGTCTTCGTCAAGGACCTCTGCAAGGACCACGCCGGCTGGCCGCT
CAACAACATGGAGAGCTCCTACAAGTTCATGGTGAAGCACGTGCAGCTCTGGAAGGTGGC
CTTCCACGGCACATCGCCCCGATGGGTCCACAACTTCTACCTCGCCGCCCTCGCCTCCTT
CTACGCTAAGAAGGTTGAGGCTGGATTGAAGAAGTACAAGCCAGATATAATAATTAGTGT
TCACCCCCTCATGCAACACATTCCTCTATGGGTACTCAAATGGCAAGGTCTGCAGAACAG
AGTAGTCTTCGCTACTGTCATCACTGACCTCAACACTTGCCACCCTACATGGTTCCATGC
TGACGTGAATAGGTGTTACTGCCCATCAGAGGAAGTAGCCAAGAGGGCAGAACTGGATGA
CCTGAAAACTTCTCAGATCCGTGTGTTCGGTCTTCCCATTCGACCATCGTTCTGCCGTGC
TGTTCTAGTTAAGGATGATTTGCGGAAGGAACTTGAATTGGATCCTGAGCTACCGGCAGT
GTTGCTGATGGGAGGTGGAGAGGGCATGGGTCCTGTAAAGAAGACTGCAAAAGCCCTTGG
AGATGTATTGTTTGACAAAGAGCTTGGAAAGCCGATTGGGCAGCTTGTTGTCATTTGTGG
TCGGAACAAAACACTGAGCTCTTCATTGCAGGCTCTTGAATGGAAAATGCCAATAAAGAT
TAGGGGATTCGAGACCCAAATGGAAAAGTGGATGGGGGCTTGTGATTGCATTATAACAAA
GGCTGGACCAGGCACCATTGCTGAAGCCTTGATTAGGGGTCTTCCTATCATCCTTAATGA
CTTCATACCTGGACAGGAAGTCGGCAACGTCCCTTATGTCGTGGACAACGGCGCAGGCGT
GTTCTCCAAGAGCCCCAAGGAAACCGCCGAACTTGTCGCCCACTGGTTCGGTCCAGGCTC
AGAGGACCGCAAGAGAATGTCGGAGAACGCGTTGAAATTGGCCCAGCCGGAAGCCGTGTT
CGACATCGTCAGGGACATCCACGAGCTCTCCCAGGAGCAAGGGGTGAAGGCGCAGATCTC
CAGCTCCCTGACATCGTCTTTCTTCATACCATCCCCTGAAGCCAGCAGCCATTGCCCCAG
CCCCATCCCGCTGGTGTGAAGCCTTGGAAGATGTGTACATAGCTAGAGAGAACCGCAACA
CCTCTTTGCACCTTTCATATCCATGCAAAGAAAAGAAAAGAAAGAAAGATCTGGCAAGTG
ATTTGGCCCGGTTTGTTTCATCTCTTGTCGCGGGGATTTCAATGTTGTCTGTTCATGGGG
GATTCCACTGTTGCGGAAGATTTTATGGGCTTGTTTTGACTGAAAAGCGCTCTTGTGCAA
TATTGTGTTGCTGTAAAGTTTGTGAGAAAAAATATCATTCGTTGAACATCATTCTTTTAC
GGTTCCCTACTTGCACATTGGGGGGTAACCGGTGGTTGGCTTGTCAGCTACACTCAATTT
TGTGGATTGGATTTTTTTGTCATGTAAATTATGCTAGTTGCCACTGGGCCACTGTAAGAA
GTGTACATTATGATAGACGTGATGGTGAAAGTGTGAGTGGAAATTGTTTGATTTTGTTGA
AGATAATGGGTGATGCACATAAAAAAAAAAAAAAAAA

Homology of Contig U35_4339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g55910.1	509	protein\|monogalactosyldiacylglycerol synthase, putative, expressed
Brachypodium v1_2	Bradi3g54387.1	505
Arabidopsis v10	AT5G20410.1	468	\| Symbols: MGD2, ATMGD2 \| monogalactosyldiacylglycerol synthase 2 \| chr5:6896765-6898581 FORWARD LENGTH=468