barSeed - Barley Seed Development Database

Probe CUST_15255_PI390587928

Source Contig U35_4340

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15255_PI390587928	Hv_44K_v2	AACTGCTGCTTTTCCTGATGTTTGCTTTGGACAGGTCAACTGTTGCTGTTTTGCAAAAAA	1847	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.374	1.602	1.070	0.814	0.423	0.402
Raw	1944.407	3443.277	2078.390	2432.491	455.771	469.662

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5569.2	3148	9e-22	3055 - 3109	100	55 / 55	plus	ABC09544
JLOC1	JLOC1_3590.2	1840	5e-22	1747 - 1801	100	55 / 55	plus
JLOC1	JLOC1_3590.1	3148	5e-22	3055 - 3109	100	55 / 55	plus
Harvest21	ABC09544	1918	3e-25	1848 - 1907	100	60 / 60	plus	ABC09544
Harvest35	U35_4340	1918	3e-25	1848 - 1907	100	60 / 60	plus

Contig Sequence (1918 bp)

>U35_4340 1918 Hv_44K_v2
GAAGATACCAATCGTTAAAGAAGATTACCTAGGAGAATGCATTAGAAAAAACAGGGTGCT
TCCATTTGATTTATATAAAGTTGCGACTACCTTGGAGGAATCATCAAAAGGTAGCACGGT
CACTGTTAAAGTTAAGGGCCGAAGTGCTGTTCATGAGGCTTCCGGTCTGCAAGATACGGG
CCATATTCTGGAAGATGGCAAAAGCATTTACAATACAACCCTAAACATTTCTGACATGAC
ACAAGGTGTTAACAGCTACTATATACTTCAGATCATCGAAGAGGATGATGGGAGTGAATG
CTATGTATTTCGAAAGTGGGGGCGAGTTGGCAGTGAAAAGATTGGTGGAAAGAAACTGGA
GGAGATGTCAAAAACTGACGCAATACATGAATTTAAAAGATTATTTCTGGAAAAGACTGG
AAACCCCTGGGAAGCATGGGAACAAAAAACAAATTTTCAGAAGCAGCCTGGGAGATTTTA
TCCACTTGACATTGATTACGGAGTTAAGCAAGCACCGAAACGGAAAGACATCAGCAAAAT
GAAAAGTTCACTTGCTCCTCAGGTGCTGGAACTCATGATGATGCTTTTCAATGTTGAAAC
ATATAGGGCTGCTATGATGGAATTTGAAATCAATATGGCAGAAATGCCCCTTGGGAAATT
AAGCAAGGAAAATATCCAGAAAGGATTTGAAGCATTAACTGAGATACAAAATCTACTGGA
TGACACTGGCAATCAAGAACTGGCTCTTAGAGAGAACTTGATTGTTGCTGCAAGCAATCG
TTTCTTCACTCTTATTCCTTCTGTTCATCCACATATTATACATGATAAGGATGACCTGAC
AATGAAAGCGAAAATGCTTGAAGCTCTTCAGGATATTGAAATTGCTTCTAAACTAGTTGG
TTTTGATGGTGACAATGATGAATCTCTTGATGATAAGTACAAAAAACTTCATTGTAACAT
CACCCCGCTAGCTCATGACAGTGAAGATTACAAGTTGGTCGAGAAATATCTCCTCAATAC
ACATGCTCCTACTCACAAGGACTGGTCATTGGAATTAGAGGAAGTCTATGTGCTTGATCG
AGATGGGGAAGGCAACAAGTACTCAAGATATAAAAATAATCTCCATAACAAGATGCTATT
ATGGCATGGTTCAAGGTTGACAAATTTTATTGGAATTCTTAGTCAAGGACTAAGGATAGC
ACCTCCTGAGGCACCCGTGACCGGCTATATGTTTGGCAAAGGCCTCTACTTTGCAGATTT
AGTAAGCAAGAGTGCACAGTATTGTTATGTGGATAGAAAAAATCCGACTGGCTTGATGCT
TCTTTCTGAGGTTGCTCTAGGAGACATGCATGAACTGAAAAAAGCAACGCCAATGGACAA
ACCTCCAAGAGGGAAGCATTCGACCAAGGGCTTAGGCAAAACTGTGCCACTAGAGTCGGA
GTTTGTTAAATGGAGGGATGATGTCGTCGTGCCTTGTGGCAAGCCAGTGCCAGCATCTAT
CAGGGCATCTGAGCTTCTGTACAACGAGTATATAGTGTACAACACAGCTCAGGTGAAGAT
GCAGTTCTTGTTGAAGGTCAAATTCCGTCACAAGCGTTGATTGGGAACCTAGGAGAGTAG
AGTTGGACTGTTAGTTGAAGAATCTTCTTTGTTGTCAGTACTCAGTAGCTAGTCTGCACT
GTTGGATATGCAATGTCATCGGTGAATTATTCCGCAGCTTAAGGTAGGTTGTGCCGCTCT
AGCATTTGATCCGTTTTGGGAATATGGCATGGGCGTCGGGTGTGAGTGGCGCGAGTAACC
CCCCGCATTGTTGTCCCCCCATTGATGATGGATGCTCAATCTTTAGGAACTGCTGCTTTT
CCTGATGTTTGCTTTGGACAGGTCAACTGTTGCTGTTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g23110.1	978	protein\|poly synthetase 1, putative, expressed
Brachypodium v1_2	Bradi1g52530.1	976
Arabidopsis v10	AT2G31320.1	983	\| Symbols: PARP2, ATPARP2 \| poly(ADP-ribose) polymerase 2 \| chr2:13354046-13359578 REVERSE LENGTH=983