barSeed - Barley Seed Development Database

Probe CUST_15254_PI390587928

Source Contig U35_4341

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15254_PI390587928	Hv_44K_v2	GTGGATATGTAAAAGCTGTCATTCAGCGATTGTTGTTCGGTTGTACCAAAGGCATTTTTT	1115	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365092	2850	2e-24	2782 - 2841	100	60 / 60	plus	ABC09508 ABC09509
JLOC1	JLOC1_43983.1	1382	8e-25	1231 - 1290	100	60 / 60	plus
Harvest21	ABC09508	1199	3e-25	25 - 84	100	60 / 60	minus	ABC09508
Harvest35	U35_4341	1199	3e-25	1116 - 1175	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_4341 1199 Hv_44K_v2
ATGAAATTCAAGCTCAACTGCTGGCACTTGAGACCATCAGATCGGAATATGCCAATGCCC
AACTAGAATGCAATGCTGCAGATGAGAGGGGCAAAGTACTCGCAGCAGAAGTCATTCTAT
TGGAAGATAAGGCTCTTAAACTGAGGTCAAATGAGTTGAAACTTCAAAAGGAAGTGGAGG
GTTTAAATTCAGAGATTTCTTCTTACAAGCGCAAAGTTTCTAGTCTGGAGAAGGAACGTC
AGCATCTTCAATCTACTGTTGAGGCTCTTCAAGAAGAAAAGAAGCTCCTACACTCTAAAT
TGAGAAACATTCCTGCTAGTGAGAAGGTAAATGTCAGAGAAAAACCATCAGTTGACAAAA
GAGATGCATCAACCGCGACGGAGGATTTAGATACAGGGGAAAGCAGCTCTTCACAAACAC
TGACCAGTACCAGTGACCCATTACAAGATGTTGGGACATCTGTTTCACAGTTTAATAATA
TTTCTGATTTACCTTCCTTCGGAGAGGCATCTTCTAGCATTCCAGACGATCAGCTCAGAA
TGATTGACAACATCAACTCCTTGATGTCGGAGTTAGCAGTGGAGAGAGAAGAGCTAATGC
GAGCACTGAGAATCGAGTCATCCAACTGCTCCAAGCTGAAGGAGCTGAACAAGGATCTAA
CACAAAAGCTGGAGACTCAGACACAGAGACTTGAGCTATTGACTTCTGAAAGGATGGCCA
ACCAGAATGTCCTTGCAAGACCGGTCGACACACACTTCAATGATGCAACAATGTATGCTG
ATGAAGAGGACAAGGTTGTCGTAAGGGTGCTTGGCTGGATAACGAAGCTCTTCCCTGGAG
GGCCAAAGCGTCGCACCAGCAAACTCCACTAGCAAAAATGAAGCTTTAGTATACAGAATG
TCTCCTCATTTACATATTTTTCTTTTGCCCGGGTTTTGGTCATAGCATCGTGAGAAGTTG
TATATTGGAGCCATTTGATGTAACCATTCTTTTTTCTTTCTATAGAAAGATGAAACAAAA
ATGTTGGAGCTATACAACGTTGTATTGGACAGTAAACAGAATAGCCTCCAAGAATCATTT
CCTCCCATCTTTTATTTCGTTGCTATGGGTTGGGGGTGGATATGTAAAAGCTGTCATTCA
GCGATTGTTGTTCGGTTGTACCAAAGGCATTTTTTTTTTTTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_4341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g68380.1	761	2e-131	protein\|expressed protein
Brachypodium v1_2	Bradi2g58397.1	771	2e-132
Arabidopsis v10	AT3G23980.1	714	8e-66	\| Symbols: BLI, KOS1 \| BLISTER \| chr3:8662818-8667440 REVERSE LENGTH=714