barSeed - Barley Seed Development Database

Probe CUST_15253_PI390587928

Source Contig U35_4342

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15253_PI390587928	Hv_44K_v2	TGTTATCAGCCAGTTGACCTCTGACATGGAGAGGTTGCAGGATGAAATTCAAGCTCAACT	967	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.459	0.848	1.460	1.247	0.873	0.793
Raw	69.725	59.078	94.406	120.866	30.588	31.584

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354329	2839	2e-24	1713 - 1772	100	60 / 60	plus	ABC09508 ABC09509
MLOC	AK365092	2850	2e-24	1626 - 1685	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.1	1805	2e-24	1527 - 1586	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.3	1690	2e-24	1515 - 1574	100	60 / 60	plus	ABC09508 ABC09509
MLOC	MLOC_43821.2	2058	2e-24	1518 - 1577	100	60 / 60	plus	ABC09508 ABC09509
JLOC1	JLOC1_28345.1	1964	8e-25	1490 - 1549	100	60 / 60	plus
Harvest21	ABC09509	1472	3e-25	968 - 1027	100	60 / 60	plus	ABC09509
Harvest35	U35_4342	1472	3e-25	968 - 1027	100	60 / 60	plus

Contig Sequence (1472 bp)

>U35_4342 1472 Hv_44K_v2
TAGTTAATGGGCATCACGATGATTGGAGAGGGGATAGTGCCCGTAAAAGGGTAGATCCCA
GTCCTGACAAGGATGTCCCTTTAACATCTAAATTAAGTGCATTTGGAAACACTGACAGTG
GTTCCCTGTCTACCGAGGTCTTGTCAAAATGGGGAGGAAATTCTTCGTCGAGTCAAGTAC
ATGGTATCGAACAATCCAGTTCATTTTCATCCGGCAACCTTTTTGGGAAGTCTGAAAGCA
CTTTCTCTCAGGATTACTCCCCAGAAAATGATATCTTCGGCCGCTTACAAGCTACCTCCA
AAGACTCTTCCCAAGCAGGGCACTCTGCATATACCAGCAACCGGGACTATGGCAGTATCT
TTAGTAGTTCTAAGGTCGCTGATGGTTTAGATCATGATGCAGATATTGGAATGCTTCGGA
ATGCATCAGATTCCATATCTGCTAATTTTGATAAACAGGATCCTTTTCTGTCAACTGCTT
ATCCAACTGCATACAATCGATCTCGGCCATCTTTTCTTGACTCTATTGGGGTACAAAGAG
CACTTCCAGCAGAAGCCCCATACATTGAACCTTCAAAAGCAAGCAATAAGCTATTCGGCA
GTTCAAATCCCGAGAGTTCTTCTGTTCAGCAGCCAAACCAACAATCAACACAAAACAATG
TCGTGGATAATTCTGTTATAGCAGGGAGACAAGAGTATAATAGTGAAAAGGGGCCATATG
ACAATTCCATACATCCTGATTCCTTGCCTTCCAAAGATGAAAAGGGTCTGCAGTATGGTA
ATCAAATGTTCCAAGATTTCACAAGTCATGAGAAAGATGACGGTTTTGCATCGCTAGAGC
AGCTCATTGAGGATTTGACAACAGAGAAGTTTTCGTTACAAAGGACTTTAGAGAAATCTC
AAGAACTAGCACAAAATTTGGCAACGGATAACTCAGCATTGACAGATAAGTTCAATCAAC
AGGCACATGTTATCAGCCAGTTGACCTCTGACATGGAGAGGTTGCAGGATGAAATTCAAG
CTCAACTGCTGGCACTTGAGACCATCAGATCGGAATATGCCAATGCCCAACTAGAATGCA
ATGCTGCAGATGAGAGGGGCAAAGTACTCGCAGCAGAAGTCATTCTATTGGAAGATAAGG
CTCTTAAACTGAGGTCAAATGAGTTGAAACTTCAAAAGGAAGTGGAGGGTTTAAATTCAG
AGATTTCTTCTTACAAGCGCAAAGTTTCTAGTCTGGAGAAGGAACGTCAGCATCTTCAAT
CTACTGTTGAGGCTCTTCAAGAAGTATCGGTATGTTTGGACAGAAAAGAAGCTCCTACAC
TCTAAATTGAGAAACATTCCTGCTAGTGAGAAGGTAAATGTCAGAGAAAAACCATCAGTT
GACAAAAGAGATGCATCAACCGCGACGGAGGATTTAGATACAGGGGAAAGCAGCTCTTCA
CAAACACTGACCAGTACCAGTGACCCATTACA

Homology of Contig U35_4342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g68380.1	761	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g58397.1	771	0.0
Arabidopsis v10	AT3G23980.1	714	2e-65	\| Symbols: BLI, KOS1 \| BLISTER \| chr3:8662818-8667440 REVERSE LENGTH=714