barSeed - Barley Seed Development Database

Probe CUST_15252_PI390587928

Source Contig U35_4343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15252_PI390587928	Hv_44K_v2	TTGCAAGGAAATGTTCAGGGGAAGTCAGAATAACAATATGTTATGCCGTGGAGTAAAAAA	735	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.180	0.176	1.202	2.054	1.154	1.494
Raw	15.999	25.287	151.489	364.245	80.786	112.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64268.1	1501	3e-22	1331 - 1386	100	56 / 56	plus	ABC10403 ABC10404 ABC21749 ABC36778
MLOC	MLOC_64268.2	1244	3e-21	1191 - 1244	100	54 / 54	plus	ABC10403 ABC10404 ABC21749 ABC36778
JLOC1	JLOC1_42184.1	1407	1e-22	1185 - 1240	100	56 / 56	plus
Harvest21	ABC10404	1054	3e-25	985 - 1044	100	60 / 60	plus	ABC10404
Harvest21	ABC10403	927	5e-23	195 - 250	100	56 / 56	minus	ABC10403
Harvest35	U35_4343	805	3e-25	736 - 795	100	60 / 60	plus
Harvest35	U35_4344	1163	5e-23	914 - 969	100	56 / 56	plus

Contig Sequence (805 bp)

>U35_4343 805 Hv_44K_v2
GCTCATCTACAAGGTCTATGTGGACGGCACCACCACCATGTCCACCCACGAAAGGAAGGC
CAGCATCAGCGAATTCTACGCCGTGATATTCCCCTCCCTCATGCAACTGGAGCACGGGAT
CAGCGACTCCGACGACCGGAGGCAGAGGGCGGTGTGCTCCGAGAGGTACAGGAGGAGAGA
CGAGCCGGAGGACAGCAAGAGGCCCGTCTCCGAGATCGACGCCGAGATAGAAGAGGAGTG
CGGGATCTGCATGGAGCTCAACAGCAGGGTCGTGCTGCCCAACTGCAGCCACGACATGTG
CATCAACTGCTACCGTCAATGGCGCTCAAGATCTCAATCCTGCCCCTTCTGCCGAGACAG
CCTCAAGAGAGTGAACTCCGGCGATCTATGGATGCTCACCGACCACCGCGACGTGGTCGA
CATGGCGACCGTGACCAGGGAGAACATCAGGCGCTTGTTCACATACATCGAGAAGCTGCC
TCTCGTCACGCTGGACAACATCTTCGATGCCTATGATTCCCATGTAAAATAACTTTGATC
CGTTGACGATGACTTGCTCACGACAGTTTTCTTTTTCTGGGAGCGTTGACGCATGCCTTG
TTGTTGGTGGTTCATGCAGAGGATGTTCCTCGTCCTAGGATGTGGCTGACCATGGATGGA
TGGAGCAGCTTGACAGAGAGACCCTGTGATGTGGTCGGTCCTCAGGCTTTGTAAATACAT
GTACAGATTTACAGTTTGCAAGGAAATGTTCAGGGGAAGTCAGAATAACAATATGTTATG
CCGTGGAGTAAAAAAAAAAAAAAAA

Homology of Contig U35_4343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46700.3	243	1e-90	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi5g26340.1	257	2e-109
Arabidopsis v10	AT3G47160.2	257	7e-79	RING/U-box superfamily protein \| chr3:17360238-17361879 REVERSE LENGTH=257