barSeed - Barley Seed Development Database

Probe CUST_15251_PI390587928

Source Contig U35_4344

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15251_PI390587928	Hv_44K_v2	ATGTGCTAATGCGGTTTACATATGGTTTCAACTTAAAAACAAGGCTGCTTCAGCTCTAAA	1089	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.290	0.219	1.064	2.004	1.196	1.496
Raw	6.420	6.207	35.527	94.530	22.065	30.452

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10403	927	3e-25	15 - 74	100	60 / 60	minus	ABC10403
Harvest35	U35_4344	1163	3e-25	1090 - 1149	100	60 / 60	plus

Contig Sequence (1163 bp)

>U35_4344 1163 Hv_44K_v2
ACTAGTTTAACTAGTAATGGCACACCACTCAGCCAGTGCACCACCGTAGTTTCCCTCCTC
TCGCTCCCGCACCCAAAACTTCGACACCAACGATACTCCACACTCCCCCTGCCGCCGGGA
TGACCGAGGACGTGCAAATGGGCGAGCCTCAGGCAGCCCCTCCCCCCGCCGCCGCCGCGG
CGGCACCGGCCCCCTCCACCCTCGAATATCTGAAGGAGATCGCCGCGGTGATCGAGGCGG
GGTGGCTCTCGAAGGAGGTACGTCGGATCTCCCGCGCCGTCCGCCTCACCGGTTTGGACG
ACACCACCACCATGTCCACCCACGAAAGGAAGGCCAGGATCAGCGAATTCTATGCCGTGA
TATTCCCCTCCCTCATGCAACTGGAGCACGGGATCAGCGACTCCGACGACCGGAGGCAGA
GGGCGGTGTGCTCCGAGAGGTACAGGAGGAGAGACGAGCCGGAGGACAGCAAGAGGCCCG
TCTCCGAGATCGACGCCGAGATAGAAGAGGAGTGCGGGATCTGCATGGAGCTCAACAGCA
GGGTCGTGCTGCCCAACTGCAGCCACGACATGTGCATCAACTGCTACCGTCAATGGCGCT
CAAGATCTCAATCCTGCCCCTTCTGCCGAGACAGCCTCAAGAGAGTGAACTCCGGCGATC
TATGGATGCTCACCGACCACCGCGACGTGGTCGACATGGCGACCGTGACCAGGGAGAACA
TTAGGCGCTTGTTCACATACATCGAGAAGCTGCCTCTCGTCACGCTGGACAACATCTTCG
ATGCCTATGATTCCCATAGGATGTTCCTCGTCCTAGGATGTGGCTGACCATGGATGGATG
GAGCAGCTTGACAGAGAGACCCTGTGATGTGGTCGGTCCTCAGGCTTTGTAAATACATGT
ACAGATTTACAGTTTGCAAGGAAATGTTCAGGGGAAGTCAGAATAACAATATGTTATGCC
GTGGAGTAATGCTTTTGTACAGATTTGTAATCTGGATGGGAACATGTAGTGCATGAAGAA
GTTATTACTCCCTCCGTTCTTAAAGATATCTCTTTCTAAAGATTACGCTATAAACTGGAG
GGAATATTTATGTGCTAATGCGGTTTACATATGGTTTCAACTTAAAAACAAGGCTGCTTC
AGCTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46700.3	243	2e-82	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi5g26340.1	257	4e-107
Arabidopsis v10	AT3G47160.2	257	7e-73	RING/U-box superfamily protein \| chr3:17360238-17361879 REVERSE LENGTH=257