barSeed - Barley Seed Development Database

Probe CUST_15249_PI390587928

Source Contig U35_4346

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15249_PI390587928	Hv_44K_v2	GAGGATTCATTTGTACTTTGTTTTTGAGAAAATTTCCGTCCAGTCAAACCTCTTGCTTTA	1605	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.472	2.617	1.175	0.754	0.175	0.221
Raw	99.760	156.909	63.899	61.666	3.251	6.692

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12441.1	2103	8e-25	2032 - 2091	100	60 / 60	plus
Harvest21	ABC12207	1681	3e-25	1606 - 1665	100	60 / 60	plus	ABC12207
Harvest35	U35_4346	1684	3e-25	1606 - 1665	100	60 / 60	plus

Contig Sequence (1684 bp)

>U35_4346 1684 Hv_44K_v2
GGCTCACTGATGCCGCCGATGGCCGTGGACAAGCAATGGCTGCTTGTCCTCTTCGTTCTC
GCCTTCTTGACGCAGGCCTGCTTGGCGAGTGGCGGAGAGGAGCCGGCGAGGTTCCAGATC
CCGCGAGACGGGAGCGTCGTGGAACTAGACGAGAGCAACTTCGAGGCGGCGCTGGCCGCC
GTCGATTTCCTCTTCGTGGACTTCCACGCCCCCTGGTGCGGCCACTGCAAACGCCTCTCC
CCGCAGTTGGATGAAGCTGCTCCGGTTCTTGCTGGGCTGAGCACCCCAATTGTAGTCGCG
AAAGTAAATGCAGAGAAGTACAAAAAGCTTGGGTCCAAATATGGAGTAGATGGCTTCCCT
ACTCTTATGCTTTTTGACCATGGAGTCCCCACAGAGTATACTGGTTCAAGGAAGGCCAGC
CAGCTCGTTGAGAGCCTGAGGAAGCTTGTCGCACCTGATGTTTCTCTTCTCATGTCCGAT
GCAGCAATCAAAAGTTTTGTCCAGGAAGCTGGTGTGGGTTTTCCGTTATTTATCGGATTT
GGGGTGGATGAATCCTCCATTGCCGAGTATGGAGCAAGGTACAAGAAGAAGGCATGGTTT
TCTACAGCAAAGGATTTCTCTGAGGATATGATGGCCGTGTATGATTTTGACAAGATACCA
GCGTTGGTTTCGCTCAACCCAAAATATAACGAGCAGAATGTTTTTTATGGCCCCTTTGAA
GGAACCTTCTTGGAGGATTTTATACGGCAATCCCTGCTTCCGATAACTGTGCCCTTCAAT
GCAGAGACTGTAAAGATGTTAAAAGATGATGATAGGAAAGTAGTCCTTGCAGTTCTGCAG
GATGAATCTGATGAAACTTCCATGCGGTTGATAAAAGTTTTAAGATCTGCAGCCAATGCA
AACCATGACCTAGTGTTTGGATATGTGGGAGTCAACCAATGGGAGGAATTCACCGAGCCT
TTCCATGATTCTAAGAGCTCACAGCTGCCAAAGTTGGTAGTCTGGGACAAAGATGAGGAG
TATGAAGTGGTTGAGGGTTTGGAGAGTTTGGAAGAAGGTGACCATGGATCCCAAATTAGT
CGTTTTCTCGAGGCATATAGAGCTGGAAGAACAATAAAGAAGACATTGGGCAGACGTTCC
CCAACGCTGCTTGGTATGAATGCGTTGTACATCCTCCTCTTCTTGGTGGCTGTGCTTGTT
GTTCTGATGTTTTTCTCCGGGCAAGGCGACGAAGATCGCCAGCCAACACGAGCCCATCAA
GAATGAATGTGTAGTAGTTTTTGGCTGCAGACTAAGCTTAAGGATTTCCTGCAGCAGAAG
AATAGAATTGATGCTTTAGAAAGGGGAACCTGGAGACGAGGATATTCTGATTTTAAATTT
CACATGCCTTAGTTTTGACCTTCCCTTGTCCGACCTGGCAGTCACTAGCCCCTCTGTTTA
GCGATTTTATGTCATGTGAAGTTATTGATTTTATATCATGTGAAGTTATTGACTTGCACC
CCAGAATATATCAGGTCAGTTATCTCCTTTGGCCCATGGAATTTCATAGGATTTTTGGAG
GATTTGGATCATTAGAAACAAAATTACGTTCGTCGTCGAGTTCTGGAGGATTCATTTGTA
CTTTGTTTTTGAGAAAATTTCCGTCCAGTCAAACCTCTTGCTTTAATTCTTAAAAAAAGA
AAAA

Homology of Contig U35_4346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g34530.1	426	0.0	protein\|OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed
Brachypodium v1_2	Bradi3g45540.1	424	0.0
Arabidopsis v10	AT1G35620.1	440	1e-137	\| Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 \| PDI-like 5-2 \| chr1:13156504-13158280 FORWARD LENGTH=440