barSeed - Barley Seed Development Database

Probe CUST_15244_PI390587928

Source Contig U35_4351

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15244_PI390587928	Hv_44K_v2	CGTTGACTGGAACTCTGTGGTCTGGAATGTGGAAGCGAAGTTCTGTTTTATGTTGTCAAA	944	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.145	1.794	1.201	0.579	0.190	0.179
Raw	38010.767	47801.000	28522.933	21119.247	2511.100	2575.707

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68802.2	2131	2e-23	2029 - 2086	100	58 / 58	plus	ABC10560
MLOC	MLOC_68802.1	2275	2e-23	2206 - 2263	100	58 / 58	plus	ABC10560
MLOC	MLOC_68802.4	1459	9e-22	1403 - 1457	100	55 / 55	plus	ABC10560
JLOC1	JLOC1_45557.2	1590	1e-23	1324 - 1381	100	58 / 58	plus
JLOC1	JLOC1_45557.1	2361	1e-23	2095 - 2152	100	58 / 58	plus
Harvest21	ABC10560	1018	3e-25	945 - 1004	100	60 / 60	plus	ABC10560
Harvest35	U35_4351	1018	3e-25	945 - 1004	100	60 / 60	plus

Contig Sequence (1018 bp)

>U35_4351 1018 Hv_44K_v2
GCCTAAACCTGCGACACAGCCTGTGACCAAGGCCGTTGAAGGTTCAGAAAAATCTTCTGT
AAAGCCTTCGCAGACTGCTGAAACCACTCCAGCTGGCACAAGTGTTGCCAAGAATAAAAC
TTCTCATGATGAACAAGGCTATTCGGTTTTCATCAAGGGTTTGCCTTACAATTCGACTGT
CCAAATGGTTGAAGAAGAGTTCAAGAAATTTGGTACGATCAAGCCAAGCGGCATCCAAGT
TAGGAACAACAAGATTGATCAATACTGCTTTGGGTTTGTTGAATTTGAATCCGAGCAATC
TATGCAAGCAGCAATTCAGGCATCTCCACTTTATATTGGTGACACTGAAGTGGGCATTGA
GCAGAAACGAACCAGCACACGAGTTGTGAATGGCGTCGTCATGAATGCTGGCGGAGGGGG
CCGTTTTCAATACGGGAGGGGGCACCGTGGTGATAACTTCAGAGGACGGGGAGGTGGCTA
CATGAACAGTGCAAGCTACCGTGGTGGTGATAACTTCAACAGGAGGGATGACGGCGAAGA
CTTCACCAGGAGGGACGACGGCGATAACTTCAACAGGAGGAACGACGGCGGTGAAAACTT
CAACAGGAGGAATGACTTCCGGAACCGGAACGAGTTTTCAGGTCGTGGGCGAGGGCCTCC
CCAGGGGAACGGGTATCACAACCACAACGGGAATGGCTTCCACCAGCCACGGCCCTTCCA
GAACGATAACGGGAGGTACGCCCGTGTCAACAATGGCCCGAAGCAGACACCGGTTGCTGC
TGCATAGAGGTGCTCCCAGGGGGAACCCTGTTTAGGGGAGCTTCAGAATAGGGGATTATT
TTTTGGGGACTCGTTACGAGAGTTTAGCGCTGGTCGTTTGGTGGTGTAAGGTGAATTTGG
CTGGTAAACGTCAATTGGTTGGCTGTGTTGCGAAAATTGAACTGCGTTGACTGGAACTCT
GTGGTCTGGAATGTGGAAGCGAAGTTCTGTTTTATGTTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g30550.1	489	1e-76	protein\|RNA-binding protein-like, putative, expressed
Brachypodium v1_2	Bradi1g59930.1	545	3e-75
Arabidopsis v10	None