barSeed - Barley Seed Development Database

Probe CUST_15240_PI390587928

Source Contig U35_4355

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15240_PI390587928	Hv_44K_v2	TTCCTGATTTGGATAACCATTTTCAGCTCATATTCACTTGTTTCTGTTCTGTACAACAAG	923	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.805	1.859	1.965	1.610	0.726	0.523
Raw	9.367	36.529	32.237	40.664	5.875	3.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27520.1	1474	2e-24	611 - 670	100	60 / 60	minus	ABC12044
JLOC1	JLOC1_18571.1	1101	8e-25	240 - 299	100	60 / 60	minus
Harvest21	ABC12044	993	3e-25	897 - 956	100	60 / 60	plus	ABC12044
Harvest35	U35_4355	1020	3e-25	924 - 983	100	60 / 60	plus

Contig Sequence (1020 bp)

>U35_4355 1020 Hv_44K_v2
CCGCCACCTCCATTCCAGCCCGACCTGCCCACGCAAGGAATTTCCAGCCTCCGCGCCTCG
TCCCCACCAGCCAGCCGCCGGACGGACGAGGAGGAGGGGAGAGGAAAGCGGCCGCTGGAT
CGACGATGATGTGGGGCGTCGCAGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCCT
CCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGACCCCGCCGCCGCCGTCGCCG
TCGGCAGATGCGACGACTTCCTCCTCCGCCAGCGGGAACCCTCGTCGTCGAGCGCGGGGA
GCGGCGTCACGGACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGC
TCGTCACGGCGCACCGCTGAAACCCCCCCTGGGGGATTCTTTCCAGTCGTCTTCTTCGTG
CGATTCGCGGGGAGAGGCTGCCTGCTACCCTATTAATTCGGCGATTGGCGACCAACGCGC
CGCCAAATTTTTGCTACTAGGACAAATTGAGGTTTTTTCGTTTCTTTTTCTCTTCCTTTG
CTGATGACGATTATCGTCCTATTGTTGTTGAGTGATGCGATTGAATTGGAACCTTCAAGT
ATGTGATGATTGTGTGTACCAGTGCCAGCAGCGGTTCTTTACCTGATCCGTCGTGCAAGC
ATGGTATTGGTATGCTATGATTTCACCTCCAAACTTTGCAGTTCTCATGTGTGGTAGGTC
TGCCGTCCTCTGTTTGTGGTTGGCCTCGTTCCGGGATTGTCCTTTCCCCCACTTTGCTGC
ACGCGTATCACATGGCTCAATGCTTGGAGTCCATCCTGTCCATGGATTTTGGGGTAAAAT
TAGCAGCTAGAGCACCTCGATGTATGTTAATGATTACTGATTCTGCTCGGCCAAATTAGT
GGCTCCTTGCCGTCCATGTCTGCTTCCTGATTTGGATAACCATTTTCAGCTCATATTCAC
TTGTTTCTGTTCTGTACAACAAGTAGAAGAATATGTTTGTCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_4355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None