- Probe CUST_1523_PI390587928
- Source Contig U35_42229
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1523_PI390587928 | Hv_44K_v2 | TGTACCCGTGGGAACCCCCTAGGTGAATAAAAACCGTTTAATGTGTTGCATGTTAAAAAA | 11 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.545 | 0.812 | 0.648 | 1.061 | 2.582 | 4.269 |
| Raw | 49.183 | 122.458 | 77.516 | 196.868 | 166.512 | 308.527 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37755 | 139 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37755 |
| Harvest35 | U35_42229 | 139 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (139 bp)
>U35_42229 139 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACATGCAACACATTAAACGGTTTTTATTCACCTAGGGGGTTC CCACGGGTACAACAAATTAAACTGGGAAACATAGGTTACAAAAACGAAACTAGACCCAAC AAACTGGTGGGCACATACC
Homology of Contig U35_42229 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |