barSeed - Barley Seed Development Database

Probe CUST_15239_PI390587928

Source Contig U35_4356

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15239_PI390587928	Hv_44K_v2	ATGTACTAGTAACAATTGAGACCAGACAACCTTGCAAAATAACTTTCCTGTGTCTTCAAA	535	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.506	4.451	1.151	0.748	0.368	0.321
Raw	154.110	200.105	44.777	50.821	7.169	7.606

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_20853.1	754	1e-23	625 - 682	100	58 / 58	plus
Harvest21	ABC09871	595	3e-25	536 - 595	100	60 / 60	plus	ABC09871
Harvest35	U35_4356	595	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_4356 595 Hv_44K_v2
ACCAGTACCCAACGCAAGCTTCTCGGTTCTCATCTAGGAACAACAATGGCCGTCACTTCT
CTGCAGCTGCCCTCTCCGATCCACTGGCTTACTCCTGCTAGAAATGGCTGCACCCGCACA
AGGCCGCGCGCTACTCTTGTTAGCTGTAAACATAACCAGTCAACCATTGTCCAAGAAGCA
AGCAGGACATCTCGTAGAGGTACCGTGGCATACATTTCGTCTGCTTTGTTTGCAATGTTC
ATGGTGGCTGAACGTGCTGAAGCAAGAACCTCCAAACAAGAGAACAAGAGGAAAGTAATG
GAGAAGCTGGAGAAGATCCGGGAGGAGGCACTAGGCTCAATGGAGAAGAAAGAGAACACG
AGTAAGGAGTCTGTGGCGAACTTGCTAATCCCTCCTACTTTGGTCGATGCTTACATCTGA
AAGGCATCGTCTCGTTAATTTTTATGTTTATGCTAAATGCTACTTAACACTTCTAAATGT
AAAAAAAGGCAGCCCGGTGCATGTAGCTTCGCCCGGTGCTACTTAACACTTCTGAATGTA
CTAGTAACAATTGAGACCAGACAACCTTGCAAAATAACTTTCCTGTGTCTTCAAA

Homology of Contig U35_4356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None