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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15238_PI390587928Hv_44K_v2GGTTGATCACCTTTCGTTGTTTTACGGTTGATCACCTTTCGTGTTTAACACATATTGTTT2328GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3431.3511.2500.8630.4010.441
Raw 1301.5902018.6191660.9901728.716292.510349.839



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_70787.147627e-2353 - 1129859 / 60minus ABC12455
MLOCMLOC_70787.244717e-2353 - 1129859 / 60minus ABC12455
JLOC1JLOC1_46996.344814e-234360 - 44199859 / 60plus
JLOC1JLOC1_46996.242564e-234135 - 41949859 / 60plus
JLOC1JLOC1_46996.147544e-234633 - 46929859 / 60plus
Harvest35U35_435724103e-252329 - 238810060 / 60plus



Contig Sequence (2410 bp)

>U35_4357 2410 Hv_44K_v2
GAAGAAGTCCTGGCAAGGCTCGACACACTGGTATCAAGATTGTTCAGCAGATTGCTATTC
TCATGGGCTGCGCTGTTCTGCCTCACCTTAAGAACCTAGTTGAGATCATTGAGCATGGTC
TAAGCGATGAGAACCAGAAAGTGCGGACGATCACAGCTCTCTCTCTTGCTGCACTTGCTG
AAGCTGCTGCGCCCTATGGTATAGAAAGTTTTGATAGTGTCCTGAAACCTCTCTGGAAGG
GTATCAGATCTCACCGTGGAAAGGTCCTTGCTGCCTTCTTGAAGGCTATTGGTTTCATCA
TCCCTCTTATGGATGCTCTGTATGCCAGTTACTACACGAAGGAGGTGATGCAAGTCCTGA
TTAGAGAGTTCCAGTCCCCAGACGAAGAGATGAAGAAGATTGTCCTGAAGGTTGTTAAGC
AGTGTGTCAGTACAGAGGGTGTGGAGGCTGATTATATCCGGAGTGACATCCTTCCAGACT
TCTTCAAACACTTCTGGGTTAGGAGAATGGCCCTAGATCGTAGGAACTATAAGCAACTTG
TGGAAACAACAGTAGAGATGGCAAACAAGGTGGGAGTTACTGGTATCGTTGGGAAGATTG
TTGAGGATCTGAAAGATGAAAGTGAGCCTTACAGGAGAATGGTGATGGAAACAATTGAGA
AGGTGGTGGCTAACTTGGGTGCTTCGGATATCGATCCTCGCCTGGAGGAGCTGCTTATTG
ATGGCATCCTGTATGCTTTCCAAGAGCAGACAAGTGATGATGCAAATGTCATGCTTAATG
GTTTTGGAGCTGTTGTGAATGCGCTTGGCCAGAGGGTCAAGCCTTATCTTCCTCAGATAT
GTGGTACCATTAAGTGGCGGTTGAATAACAAGAGTGCGAAAGTTAGGCAGCAAGCTGCTG
ATCTGATCTCAAGGATAGCTATTGTGATGAAGCAGTGCCAGGAGGAGCAGCTTATGGGTC
ACCTGGGTGTTGTGCTATATGAGTACTTGGGAGAGGAGTATCCTGAGGTGCTGGGTTCAA
TTCTCGGAGCATTGAAGGCTATCGTGAATGTTATTGGTATGACTAAGATGACGCCTCCAA
TCAAGGATCTCCTTCCTCGTCTGACCCCCATCTTGAAGAATAGGCATGAGAAGGTCCAAG
AGAACTGCATTGATCTAGTTGGTAGGATTGCTGATCGTGGAGCAGAATTTGTACCAGCTA
GGGAGTGGATGAGGATTTGTTTTGAGTTGCTGGAGATGTTGAAGGCTCACAAGAAGGGTA
TCAGAAGAGCCACTGTGAACACATTTGGTTATATCGCCAAGGCAATAGGGCCACAGGATG
TGTTAGCCACTCTGTTGAATAACTTGAAGGTGCAGGAGCGACAGAACCGTGTGTGCACTA
CTGTAGCAATTGCTATTGTTGCTGAAACGTGCTCGCCTTTTACAGTTTTGCCCGCCCTCA
TGAATGAGTACCGAGTTCCGGAGCTAAATGTTCAGAATGGTGTTTTGAAGTCTCTCTCTT
TCCTCTTTGAGTATATTGGTGAGATGGGGAAAGATTACATATATGCTGTCACTCCCCTGC
TCGAAGATGCCCTAATGGACAGGGATCTGGTACACAGGCAGACTGCTGCATCTGCTGTTA
AGCATATGGCTCTGGGAGTTGCTGGCTTGGGTTGTGAGGATGCTCTTGTCCACTTGCTTA
ACTATATCTGGCCCAACATATTCGAGACATCTCCCCATGTTATAAATGCCGTCATGGAGG
CTATCGAGGGGATGCGAGTGGCTCTAGGTGCAGCTGTGGTTCTGAATTATTGCCTCCAAG
GCCTTTTCCATCCAGCAAGGAAAGTACGCGAAGTATATTGGAAGATCTACAACTCGCTGT
ATATTGGTGCACAAGATGCACTTGTTGCTTCTTATCCTGCACTAGGCGATGATGGAGACA
ATATCTTCAGCCGTCCAGAGCTAGCCATGTTCGTATGATCTATATTTACATACCCTGCTT
TGTGAAGACTTCACATTTTGAGGAGTATCTTATGTCCAGGGTATTTCTTTCCAAGTGTTC
CACTGAAGAGTCTTCTTATCTTGATCTGCGACCGGGCGAGCGACGTGGCAGAGAAGCATG
TTTATTTCGCCGTGGCTGATAATATGTGAAATCAAGTCCTTAATAGTGAAGACAATACAA
TCATACTAGCATGAACATCGTCTTATTTATCATGTATATTTGGTTATGATGGCCAGCCTC
TGCTGTCAAAACTCTGTTTTAGCGATGTCTTGTAACGCTGTAAACCGTCAAGCTCTGTAC
TATGTGTGCTGTGGCATGATTATGTCTGGAATGCTTGCGTTGTTTTACGGTTGATCACCT
TTCGTTGTTTTACGGTTGATCACCTTTCGTGTTTAACACATATTGTTTTTTGTAAAAAAA
AAAAAAAAAA



Homology of Contig U35_4357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g05410.18170.0protein|splicing factor 3B subunit 1, putative, expressed
Brachypodium v1_2Bradi3g03690.112800.0
Arabidopsis v10AT5G64270.112690.0splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269